3du2: Difference between revisions

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-{{Seed}}
-[[Image:3du2.jpg|left|200px]]
-<!--
+==E(L212)A mutant structure of photosynthetic reaction center from Rhodobacter sphaeroides==
-The line below this paragraph, containing "STRUCTURE_3du2", creates the "Structure Box" on the page.
+<StructureSection load='3du2' size='340' side='right'caption='[[3du2]], [[Resolution|resolution]] 3.10&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[3du2]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Cereibacter_sphaeroides Cereibacter sphaeroides]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DU2 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3DU2 FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.1&#8491;</td></tr>
--->
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BCL:BACTERIOCHLOROPHYLL+A'>BCL</scene>, <scene name='pdbligand=BPH:BACTERIOPHEOPHYTIN+A'>BPH</scene>, <scene name='pdbligand=CDL:CARDIOLIPIN'>CDL</scene>, <scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=LDA:LAURYL+DIMETHYLAMINE-N-OXIDE'>LDA</scene>, <scene name='pdbligand=SPN:SPEROIDENONE'>SPN</scene>, <scene name='pdbligand=U10:UBIQUINONE-10'>U10</scene></td></tr>
-{{STRUCTURE_3du2|  PDB=3du2  |  SCENE=  }}
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3du2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3du2 OCA], [https://pdbe.org/3du2 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3du2 RCSB], [https://www.ebi.ac.uk/pdbsum/3du2 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3du2 ProSAT]</span></td></tr>
+</table>
-===E(L212)A mutant structure of photosynthetic reaction center from Rhodobacter sphaeroides===
+== Function ==
+[https://www.uniprot.org/uniprot/RCEL_CERSP RCEL_CERSP] The reaction center is a membrane-bound complex that mediates the initial photochemical event in the electron transfer process of photosynthesis.
+== Evolutionary Conservation ==
-==About this Structure==
+[[Image:Consurf_key_small.gif|200px|right]]
-DU2 is a 3 chains structure of sequences from [http://en.wikipedia.org/wiki/Rhodobacter_sphaeroides Rhodobacter sphaeroides]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DU2 OCA].
+Check<jmol>
-[[Category: Rhodobacter sphaeroides]]
+  <jmolCheckbox>
-[[Category: Pokkuluri, P R.]]
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/du/3du2_consurf.spt"</scriptWhenChecked>
-[[Category: Schiffer, M.]]
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-[[Category: Membrane protein]]
+    <text>to colour the structure by Evolutionary Conservation</text>
-[[Category: Mutant photosynthetic reaction center]]
+  </jmolCheckbox>
-[[Category: Photosynthesis]]
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3du2 ConSurf].
-[[Category: Proton transfer]]
+<div style="clear:both"></div>
+__TOC__
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jul  1 09:36:52 2009''
+</StructureSection>
+[[Category: Cereibacter sphaeroides]]
+[[Category: Large Structures]]
+[[Category: Pokkuluri PR]]
+[[Category: Schiffer M]]