3dob: Difference between revisions

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA

@@ Line 1: / Line 1: @@
-{{Seed}}
-[[Image:3dob.jpg|left|200px]]
-<!--
+==Peptide-binding domain of Heat shock 70 kDa protein F44E5.5 from C.elegans.==
-The line below this paragraph, containing "STRUCTURE_3dob", creates the "Structure Box" on the page.
+<StructureSection load='3dob' size='340' side='right'caption='[[3dob]], [[Resolution|resolution]] 2.39&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[3dob]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Caenorhabditis_elegans Caenorhabditis elegans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DOB OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3DOB FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.39&#8491;</td></tr>
--->
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BME:BETA-MERCAPTOETHANOL'>BME</scene></td></tr>
-{{STRUCTURE_3dob|  PDB=3dob  |  SCENE=  }}
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3dob FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dob OCA], [https://pdbe.org/3dob PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3dob RCSB], [https://www.ebi.ac.uk/pdbsum/3dob PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3dob ProSAT], [https://www.topsan.org/Proteins/MCSG/3dob TOPSAN]</span></td></tr>
+</table>
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/do/3dob_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3dob ConSurf].
+<div style="clear:both"></div>
-===Peptide-binding domain of Heat shock 70 kDa protein F44E5.5 from C.elegans.===
+==See Also==
+*[[Heat Shock Protein structures|Heat Shock Protein structures]]
+__TOC__
-==About this Structure==
+</StructureSection>
-DOB is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Caenorhabditis_elegans Caenorhabditis elegans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DOB OCA].
 [[Category: Caenorhabditis elegans]]
-[[Category: Single protein]]
+[[Category: Large Structures]]
-[[Category: Gu, M.]]
+[[Category: Gu M]]
-[[Category: Hatzos, C.]]
+[[Category: Hatzos C]]
-[[Category: Joachimiak, A.]]
+[[Category: Joachimiak A]]
-[[Category: MCSG, Midwest Center for Structural Genomics.]]
+[[Category: Morimoto RI]]
-[[Category: Morimoto, R I.]]
+[[Category: Osipiuk J]]
-[[Category: Osipiuk, J.]]
+[[Category: Voisine C]]
-[[Category: Voisine, C.]]
+[[Category: Zhang R]]
-[[Category: Zhang, R.]]
-[[Category: Apc90015 11]]
-[[Category: Atp-binding]]
-[[Category: Hsp70]]
-[[Category: Mcsg]]
-[[Category: Midwest center for structural genomic]]
-[[Category: Nucleotide-binding]]
-[[Category: Peptide-binding domain]]
-[[Category: Protein binding]]
-[[Category: Protein structure initiative]]
-[[Category: Psi-2]]
-[[Category: Structural genomic]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jul 23 11:54:24 2008''