3dm0: Difference between revisions

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OCA

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 ==Maltose Binding Protein fusion with RACK1 from A. thaliana==
-<StructureSection load='3dm0' size='340' side='right' caption='[[3dm0]], [[Resolution|resolution]] 2.40&Aring;' scene=''>
+<StructureSection load='3dm0' size='340' side='right'caption='[[3dm0]], [[Resolution|resolution]] 2.40&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[3dm0]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Arath Arath]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DM0 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3DM0 FirstGlance]. <br>
+<table><tr><td colspan='2'>[[3dm0]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana] and [https://en.wikipedia.org/wiki/Escherichia_coli_K-12 Escherichia coli K-12]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DM0 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3DM0 FirstGlance]. <br>
-</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=GLC:ALPHA-D-GLUCOSE'>GLC</scene></td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.4&#8491;</td></tr>
-<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">malE, b4034, JW3994,ARCA, At1g18080, T10F20.9, T10O22.6 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=3702 ARATH])</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=GLC:ALPHA-D-GLUCOSE'>GLC</scene>, <scene name='pdbligand=PRD_900001:alpha-maltose'>PRD_900001</scene></td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3dm0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dm0 OCA], [http://pdbe.org/3dm0 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3dm0 RCSB], [http://www.ebi.ac.uk/pdbsum/3dm0 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3dm0 ProSAT]</span></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3dm0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dm0 OCA], [https://pdbe.org/3dm0 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3dm0 RCSB], [https://www.ebi.ac.uk/pdbsum/3dm0 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3dm0 ProSAT]</span></td></tr>
 </table>
 == Function ==
-[[http://www.uniprot.org/uniprot/MALE_ECOLI MALE_ECOLI]] Involved in the high-affinity maltose membrane transport system MalEFGK. Initial receptor for the active transport of and chemotaxis toward maltooligosaccharides.
+[https://www.uniprot.org/uniprot/MALE_ECOLI MALE_ECOLI] Involved in the high-affinity maltose membrane transport system MalEFGK. Initial receptor for the active transport of and chemotaxis toward maltooligosaccharides.[https://www.uniprot.org/uniprot/GBLPA_ARATH GBLPA_ARATH] Major component of the RACK1 regulatory proteins that play a role in multiple signal transduction pathways. Involved in multiple hormone responses and developmental processes (PubMed:16829549, PubMed:18715992, PubMed:18947417). MAPK cascade scaffolding protein involved in the protease IV and ArgC signaling pathway but not the flg22 pathway (PubMed:25731164).<ref>PMID:16829549</ref> <ref>PMID:18715992</ref> <ref>PMID:18947417</ref> <ref>PMID:25731164</ref>
 == Evolutionary Conservation ==
 [[Image:Consurf_key_small.gif|200px|right]]
 Check<jmol>
    <jmolCheckbox>
-     <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dm/3dm0_consurf.spt"</scriptWhenChecked>
+     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dm/3dm0_consurf.spt"</scriptWhenChecked>
      <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
      <text>to colour the structure by Evolutionary Conservation</text>
@@ Line 33: / Line 33: @@
 __TOC__
 </StructureSection>
-[[Category: Arath]]
+[[Category: Arabidopsis thaliana]]
-[[Category: Armstrong, D L]]
+[[Category: Escherichia coli K-12]]
-[[Category: Moon, A F]]
+[[Category: Large Structures]]
-[[Category: Pedersen, L C]]
+[[Category: Armstrong DL]]
-[[Category: Scappini, E L]]
+[[Category: Moon AF]]
-[[Category: Ullah, H]]
+[[Category: Pedersen LC]]
-[[Category: Williams, L V]]
+[[Category: Scappini EL]]
-[[Category: Beta-propeller wd40 repeat]]
+[[Category: Ullah H]]
-[[Category: Mbp rack1a]]
+[[Category: Williams LV]]
-[[Category: Receptor for activiated protein c-kinase 1]]
-[[Category: Signaling protein]]
-[[Category: Sugar binding protein]]
-[[Category: Sugar transport]]
-[[Category: Transport]]
-[[Category: Wd repeat]]