3dir: Difference between revisions

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OCA

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 ==Crystallization of the Thermotoga maritima lysine riboswitch bound to N6-1-iminoethyl-L-Lysine==
-<StructureSection load='3dir' size='340' side='right' caption='[[3dir]], [[Resolution|resolution]] 2.90&Aring;' scene=''>
+<StructureSection load='3dir' size='340' side='right'caption='[[3dir]], [[Resolution|resolution]] 2.90&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[3dir]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DIR OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3DIR FirstGlance]. <br>
+<table><tr><td colspan='2'>[[3dir]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermotoga_maritima Thermotoga maritima]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DIR OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3DIR FirstGlance]. <br>
-</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=IEL:N~6~-[(1Z)-ETHANIMIDOYL]-L-LYSINE'>IEL</scene>, <scene name='pdbligand=K:POTASSIUM+ION'>K</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.9&#8491;</td></tr>
-<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=CCC:CYTIDINE-5-PHOSPHATE-2,3-CYCLIC+PHOSPHATE'>CCC</scene>, <scene name='pdbligand=GTP:GUANOSINE-5-TRIPHOSPHATE'>GTP</scene></td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CCC:CYTIDINE-5-PHOSPHATE-2,3-CYCLIC+PHOSPHATE'>CCC</scene>, <scene name='pdbligand=GTP:GUANOSINE-5-TRIPHOSPHATE'>GTP</scene>, <scene name='pdbligand=IEL:N~6~-[(1Z)-ETHANIMIDOYL]-L-LYSINE'>IEL</scene>, <scene name='pdbligand=K:POTASSIUM+ION'>K</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
-<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3dig|3dig]], [[3dil|3dil]], [[3dim|3dim]], [[3dio|3dio]], [[3diq|3diq]], [[3dis|3dis]], [[3dix|3dix]], [[3diy|3diy]], [[3diz|3diz]], [[3dj0|3dj0]], [[3dj2|3dj2]]</td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3dir FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dir OCA], [https://pdbe.org/3dir PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3dir RCSB], [https://www.ebi.ac.uk/pdbsum/3dir PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3dir ProSAT]</span></td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3dir FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dir OCA], [http://pdbe.org/3dir PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3dir RCSB], [http://www.ebi.ac.uk/pdbsum/3dir PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3dir ProSAT]</span></td></tr>
 </table>
 <div style="background-color:#fffaf0;">
@@ Line 18: / Line 17: @@
 </div>
 <div class="pdbe-citations 3dir" style="background-color:#fffaf0;"></div>
+==See Also==
+*[[Riboswitch 3D structures|Riboswitch 3D structures]]
 == References ==
 <references/>
 __TOC__
 </StructureSection>
-[[Category: Serganov, A A]]
+[[Category: Large Structures]]
-[[Category: Lysine]]
+[[Category: Thermotoga maritima]]
-[[Category: Riboswitch]]
+[[Category: Serganov AA]]
-[[Category: Rna]]