3db9: Difference between revisions

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-[[Image:3db9.png|left|200px]]
-{{STRUCTURE_3db9|  PDB=3db9  |  SCENE=  }}
+==Crystal structure of UPF0317 protein Atu3911 from Agrobacterium tumefaciens. NorthEast Strcutural Genomics target AtR186==
+<StructureSection load='3db9' size='340' side='right'caption='[[3db9]], [[Resolution|resolution]] 2.80&Aring;' scene=''>
-===Crystal structure of UPF0317 protein Atu3911 from Agrobacterium tumefaciens. NorthEast Strcutural Genomics target AtR186===
+== Structural highlights ==
+<table><tr><td colspan='2'>[[3db9]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Agrobacterium_fabrum_str._C58 Agrobacterium fabrum str. C58]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DB9 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3DB9 FirstGlance]. <br>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.8&#8491;</td></tr>
-==About this Structure==
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3db9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3db9 OCA], [https://pdbe.org/3db9 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3db9 RCSB], [https://www.ebi.ac.uk/pdbsum/3db9 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3db9 ProSAT], [https://www.topsan.org/Proteins/NESGC/3db9 TOPSAN]</span></td></tr>
-[[3db9]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Agrobacterium_tumefaciens_str._c58 Agrobacterium tumefaciens str. c58]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DB9 OCA].
+</table>
-[[Category: Agrobacterium tumefaciens str. c58]]
+== Function ==
-[[Category: Abashidze, M.]]
+[https://www.uniprot.org/uniprot/Y3911_AGRFC Y3911_AGRFC]
-[[Category: Acton, T B.]]
+== Evolutionary Conservation ==
-[[Category: Baran, M C.]]
+[[Image:Consurf_key_small.gif|200px|right]]
-[[Category: Hunt, J F.]]
+Check<jmol>
-[[Category: Janjua, H.]]
+  <jmolCheckbox>
-[[Category: Liu, J.]]
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/db/3db9_consurf.spt"</scriptWhenChecked>
-[[Category: Montelione, G T.]]
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-[[Category: NESG, Northeast Structural Genomics Consortium.]]
+    <text>to colour the structure by Evolutionary Conservation</text>
-[[Category: Owens, L.]]
+  </jmolCheckbox>
-[[Category: Rost, B.]]
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3db9 ConSurf].
-[[Category: Seetharaman, J.]]
+<div style="clear:both"></div>
-[[Category: Tong, L.]]
+__TOC__
-[[Category: Wang, D.]]
+</StructureSection>
-[[Category: Xiao, R.]]
+[[Category: Agrobacterium fabrum str. C58]]
-[[Category: Agrobacterium tumefacien]]
+[[Category: Large Structures]]
-[[Category: Belongs to the upf0317 family]]
+[[Category: Abashidze M]]
-[[Category: Nesg]]
+[[Category: Acton TB]]
-[[Category: Northeast structural genomics consortium]]
+[[Category: Baran MC]]
-[[Category: Protein structure initiative]]
+[[Category: Hunt JF]]
-[[Category: Psi-2]]
+[[Category: Janjua H]]
-[[Category: Structural genomic]]
+[[Category: Liu J]]
-[[Category: Unknown function]]
+[[Category: Montelione GT]]
+[[Category: Owens L]]
+[[Category: Rost B]]
+[[Category: Seetharaman J]]
+[[Category: Tong L]]
+[[Category: Wang D]]
+[[Category: Xiao R]]