3d53: Difference between revisions

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==2.2 A crystal structure of inorganic pyrophosphatase from Rickettsia prowazekii==
==2.2 A crystal structure of inorganic pyrophosphatase from Rickettsia prowazekii==
<StructureSection load='3d53' size='340' side='right' caption='[[3d53]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
<StructureSection load='3d53' size='340' side='right'caption='[[3d53]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[3d53]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Ricpr Ricpr]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3D53 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3D53 FirstGlance]. <br>
<table><tr><td colspan='2'>[[3d53]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Rickettsia_prowazekii_str._Madrid_E Rickettsia prowazekii str. Madrid E]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3D53 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3D53 FirstGlance]. <br>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.2&#8491;</td></tr>
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">ppa, RP589 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=272947 RICPR])</td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Inorganic_diphosphatase Inorganic diphosphatase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.6.1.1 3.6.1.1] </span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3d53 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3d53 OCA], [https://pdbe.org/3d53 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3d53 RCSB], [https://www.ebi.ac.uk/pdbsum/3d53 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3d53 ProSAT], [https://www.topsan.org/Proteins/SSGCID/3d53 TOPSAN]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3d53 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3d53 OCA], [http://pdbe.org/3d53 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3d53 RCSB], [http://www.ebi.ac.uk/pdbsum/3d53 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3d53 ProSAT], [http://www.topsan.org/Proteins/SSGCID/3d53 TOPSAN]</span></td></tr>
</table>
</table>
== Function ==
[https://www.uniprot.org/uniprot/IPYR_RICPR IPYR_RICPR]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
   <jmolCheckbox>
   <jmolCheckbox>
     <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/d5/3d53_consurf.spt"</scriptWhenChecked>
     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/d5/3d53_consurf.spt"</scriptWhenChecked>
     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
     <text>to colour the structure by Evolutionary Conservation</text>
     <text>to colour the structure by Evolutionary Conservation</text>
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==See Also==
==See Also==
*[[Inorganic pyrophosphatase|Inorganic pyrophosphatase]]
*[[Inorganic pyrophosphatase 3D structures|Inorganic pyrophosphatase 3D structures]]
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Inorganic diphosphatase]]
[[Category: Large Structures]]
[[Category: Ricpr]]
[[Category: Rickettsia prowazekii str. Madrid E]]
[[Category: Structural genomic]]
[[Category: Hydrolase]]
[[Category: Inorganic]]
[[Category: Magnesium]]
[[Category: Metal-binding]]
[[Category: Pyrophosphatase]]
[[Category: Rickettsia]]
[[Category: Ssgcid]]

Latest revision as of 15:40, 30 August 2023

2.2 A crystal structure of inorganic pyrophosphatase from Rickettsia prowazekii2.2 A crystal structure of inorganic pyrophosphatase from Rickettsia prowazekii

Structural highlights

3d53 is a 6 chain structure with sequence from Rickettsia prowazekii str. Madrid E. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 2.2Å
Ligands:,
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT, TOPSAN

Function

IPYR_RICPR

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

See Also

3d53, resolution 2.20Å

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