3d47: Difference between revisions

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-[[Image:3d47.png|left|200px]]
-{{STRUCTURE_3d47|  PDB=3d47  |  SCENE=  }}
+==Crystal structure of L-rhamnonate dehydratase from Salmonella typhimurium complexed with Mg and D-malate==
+<StructureSection load='3d47' size='340' side='right'caption='[[3d47]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
-===Crystal structure of L-rhamnonate dehydratase from Salmonella typhimurium complexed with Mg and D-malate===
+== Structural highlights ==
+<table><tr><td colspan='2'>[[3d47]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._LT2 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3D47 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3D47 FirstGlance]. <br>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8&#8491;</td></tr>
-==About this Structure==
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=MLT:D-MALATE'>MLT</scene></td></tr>
-[[3d47]] is a 8 chain structure with sequence from [http://en.wikipedia.org/wiki/Salmonella_enterica_subsp._enterica_serovar_typhimurium_str._lt2 Salmonella enterica subsp. enterica serovar typhimurium str. lt2]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3D47 OCA].
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3d47 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3d47 OCA], [https://pdbe.org/3d47 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3d47 RCSB], [https://www.ebi.ac.uk/pdbsum/3d47 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3d47 ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/3d47 TOPSAN]</span></td></tr>
-[[Category: Salmonella enterica subsp. enterica serovar typhimurium str. lt2]]
+</table>
-[[Category: Almo, S C.]]
+== Function ==
-[[Category: Burley, S K.]]
+[https://www.uniprot.org/uniprot/RHMD_SALTY RHMD_SALTY] Catalyzes the dehydration of L-rhamnonate to 2-keto-3-deoxy-L-rhamnonate (KDR). Can also dehydrate L-lyxonate and L-mannonate, although less efficiently, but not 2-keto-4-hydroxyheptane-1,7-dioate.<ref>PMID:18754693</ref>
-[[Category: Fedorov, A A.]]
+== Evolutionary Conservation ==
-[[Category: Fedorov, E V.]]
+[[Image:Consurf_key_small.gif|200px|right]]
-[[Category: Gerlt, J A.]]
+Check<jmol>
-[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics.]]
+  <jmolCheckbox>
-[[Category: Sauder, J M.]]
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/d4/3d47_consurf.spt"</scriptWhenChecked>
-[[Category: L-rhamnonate dehydratase]]
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-[[Category: Lyase]]
+    <text>to colour the structure by Evolutionary Conservation</text>
-[[Category: New york sgx research center for structural genomic]]
+  </jmolCheckbox>
-[[Category: Nysgxrc]]
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3d47 ConSurf].
-[[Category: Protein structure initiative]]
+<div style="clear:both"></div>
-[[Category: Psi-2]]
+== References ==
-[[Category: Structural genomic]]
+<references/>
-[[Category: Target 9265a]]
+__TOC__
+</StructureSection>
+[[Category: Large Structures]]
+[[Category: Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]]
+[[Category: Almo SC]]
+[[Category: Burley SK]]
+[[Category: Fedorov AA]]
+[[Category: Fedorov EV]]
+[[Category: Gerlt JA]]
+[[Category: Sauder JM]]