3b7p: Difference between revisions

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA

@@ Line 1: / Line 1: @@
-[[Image:3b7p.gif|left|200px]]<br /><applet load="3b7p" size="350" color="white" frame="true" align="right" spinBox="true"
-caption="3b7p, resolution 2.00&Aring;" />
-'''Crystal structure of spermidine synthase from Plasmodium falciparum in complex with spermine'''<br />
-==About this Structure==
+==Crystal structure of spermidine synthase from Plasmodium falciparum in complex with spermine==
-B7P is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Plasmodium_falciparum_3d7 Plasmodium falciparum 3d7] with <scene name='pdbligand=SPM:'>SPM</scene> and <scene name='pdbligand=MTA:'>MTA</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. Active as [http://en.wikipedia.org/wiki/Spermidine_synthase Spermidine synthase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.5.1.16 2.5.1.16] Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3B7P OCA].
+<StructureSection load='3b7p' size='340' side='right'caption='[[3b7p]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
-[[Category: Plasmodium falciparum 3d7]]
+== Structural highlights ==
-[[Category: Single protein]]
+<table><tr><td colspan='2'>[[3b7p]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Plasmodium_falciparum_3D7 Plasmodium falciparum 3D7]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3B7P OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3B7P FirstGlance]. <br>
-[[Category: Spermidine synthase]]
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
-[[Category: Arrowsmith, C.H.]]
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MTA:5-DEOXY-5-METHYLTHIOADENOSINE'>MTA</scene>, <scene name='pdbligand=SPM:SPERMINE'>SPM</scene></td></tr>
-[[Category: Bochkarev, A.]]
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3b7p FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3b7p OCA], [https://pdbe.org/3b7p PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3b7p RCSB], [https://www.ebi.ac.uk/pdbsum/3b7p PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3b7p ProSAT]</span></td></tr>
-[[Category: Dong, A.]]
+</table>
-[[Category: Edwards, A.M.]]
+== Function ==
-[[Category: Hui, R.]]
+[https://www.uniprot.org/uniprot/Q8II73_PLAF7 Q8II73_PLAF7]
-[[Category: Kozieradzki, I.]]
+== Evolutionary Conservation ==
-[[Category: Lew, J.]]
+[[Image:Consurf_key_small.gif|200px|right]]
-[[Category: Plotnikov, A.N.]]
+Check<jmol>
-[[Category: Qiu, W.]]
+  <jmolCheckbox>
-[[Category: Ren, H.]]
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/b7/3b7p_consurf.spt"</scriptWhenChecked>
-[[Category: SGC, Structural.Genomics.Consortium.]]
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-[[Category: Schapira, M.]]
+    <text>to colour the structure by Evolutionary Conservation</text>
-[[Category: Sundstrom, M.]]
+  </jmolCheckbox>
-[[Category: Vedadi, M.]]
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3b7p ConSurf].
-[[Category: Wasney, G.]]
+<div style="clear:both"></div>
-[[Category: Weigelt, J.]]
-[[Category: Wu, H.]]
-[[Category: Zhao, Y.]]
-[[Category: MTA]]
-[[Category: SPM]]
-[[Category: sgc]]
-[[Category: spermidine synthase]]
-[[Category: spermine]]
-[[Category: structural genomics consortium]]
-[[Category: transferase]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jan 23 12:11:38 2008''
+==See Also==
+*[[Spermidine synthase 3D structures|Spermidine synthase 3D structures]]
+__TOC__
+</StructureSection>
+[[Category: Large Structures]]
+[[Category: Plasmodium falciparum 3D7]]
+[[Category: Arrowsmith CH]]
+[[Category: Bochkarev A]]
+[[Category: Dong A]]
+[[Category: Edwards AM]]
+[[Category: Hui R]]
+[[Category: Kozieradzki I]]
+[[Category: Lew J]]
+[[Category: Plotnikov AN]]
+[[Category: Qiu W]]
+[[Category: Ren H]]
+[[Category: Schapira M]]
+[[Category: Sundstrom M]]
+[[Category: Vedadi M]]
+[[Category: Wasney G]]
+[[Category: Weigelt J]]
+[[Category: Wu H]]
+[[Category: Zhao Y]]