2q32: Difference between revisions

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-{{Seed}}
-[[Image:2q32.png|left|200px]]
-<!--
+==Crystal structure of human heme oxygenase-2 C127A (HO-2)==
-The line below this paragraph, containing "STRUCTURE_2q32", creates the "Structure Box" on the page.
+<StructureSection load='2q32' size='340' side='right'caption='[[2q32]], [[Resolution|resolution]] 2.40&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[2q32]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2Q32 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2Q32 FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.4&#8491;</td></tr>
--->
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=OXN:OXTOXYNOL-10'>OXN</scene></td></tr>
-{{STRUCTURE_2q32|  PDB=2q32  |  SCENE=  }}
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2q32 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2q32 OCA], [https://pdbe.org/2q32 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2q32 RCSB], [https://www.ebi.ac.uk/pdbsum/2q32 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2q32 ProSAT], [https://www.topsan.org/Proteins/CESG/2q32 TOPSAN]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/HMOX2_HUMAN HMOX2_HUMAN] Heme oxygenase cleaves the heme ring at the alpha methene bridge to form biliverdin. Biliverdin is subsequently converted to bilirubin by biliverdin reductase. Under physiological conditions, the activity of heme oxygenase is highest in the spleen, where senescent erythrocytes are sequestrated and destroyed. Heme oxygenase 2 could be implicated in the production of carbon monoxide in brain where it could act as a neurotransmitter.
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/q3/2q32_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2q32 ConSurf].
+<div style="clear:both"></div>
+<div style="background-color:#fffaf0;">
+== Publication Abstract from PubMed ==
+Heme oxygenase (HO) catalyzes the first step in the heme degradation pathway. The crystal structures of apo- and heme-bound truncated human HO-2 reveal a primarily alpha-helical architecture similar to that of human HO-1 and other known HOs. Proper orientation of heme in HO-2 is required for the regioselective oxidation of the alpha-mesocarbon. This is accomplished by interactions within the heme binding pocket, which is made up of two helices. The iron coordinating residue, His(45), resides on the proximal helix. The distal helix contains highly conserved glycine residues that allow the helix to flex and interact with the bound heme. Tyr(154), Lys(199), and Arg(203) orient the heme through direct interactions with the heme propionates. The rearrangements of side chains in heme-bound HO-2 compared with apoHO-2 further elucidate HO-2 heme interactions.
-===Crystal structure of human heme oxygenase-2 C127A (HO-2)===
+Comparison of apo- and heme-bound crystal structures of a truncated human heme oxygenase-2.,Bianchetti CM, Yi L, Ragsdale SW, Phillips GN Jr J Biol Chem. 2007 Dec 28;282(52):37624-31. Epub 2007 Oct 26. PMID:17965015<ref>PMID:17965015</ref>
+From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
+</div>
+<div class="pdbe-citations 2q32" style="background-color:#fffaf0;"></div>
-<!--
+==See Also==
-The line below this paragraph, {{ABSTRACT_PUBMED_17965015}}, adds the Publication Abstract to the page
+*[[Heme oxygenase 3D structures|Heme oxygenase 3D structures]]
-(as it appears on PubMed at http://www.pubmed.gov), where 17965015 is the PubMed ID number.
+== References ==
--->
+<references/>
-{{ABSTRACT_PUBMED_17965015}}
+__TOC__
+</StructureSection>
-==About this Structure==
-Q32 is a 2 chains structure of sequences from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2Q32 OCA].
-==Reference==
-<ref group="xtra">PMID:17965015</ref><references group="xtra"/>
-[[Category: Heme oxygenase]]
 [[Category: Homo sapiens]]
-[[Category: Bianchetti, C M.]]
+[[Category: Large Structures]]
-[[Category: Bingman, C A.]]
+[[Category: Bianchetti CM]]
-[[Category: Bitto, E.]]
+[[Category: Bingman CA]]
-[[Category: CESG, Center for Eukaryotic Structural Genomics.]]
+[[Category: Bitto E]]
-[[Category: Jr., G N.Phillips.]]
+[[Category: Phillips Jr GN]]
-[[Category: Wesenberg, G E.]]
+[[Category: Wesenberg GE]]
-[[Category: Center for eukaryotic structural genomic]]
-[[Category: Cesg]]
-[[Category: Heme oxygenase]]
-[[Category: Ho-2]]
-[[Category: Oxidoreductase]]
-[[Category: Protein structure initiative]]
-[[Category: Psi]]
-[[Category: Structural genomics community request]]
-[[Category: Structural genomics medical relevance]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 13:28:58 2009''