2plw: Difference between revisions

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA

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-[[Image:2plw.jpg|left|200px]]<br /><applet load="2plw" size="350" color="white" frame="true" align="right" spinBox="true"
-caption="2plw, resolution 1.700&Aring;" />
-'''Crystal structure of a ribosomal RNA methyltransferase, putative, from Plasmodium falciparum (PF13_0052).'''<br />
-==About this Structure==
+==Crystal structure of a ribosomal RNA methyltransferase, putative, from Plasmodium falciparum (PF13_0052).==
-PLW is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Plasmodium_falciparum_3d7 Plasmodium falciparum 3d7] with <scene name='pdbligand=SO4:'>SO4</scene> and <scene name='pdbligand=SAM:'>SAM</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PLW OCA].
+<StructureSection load='2plw' size='340' side='right'caption='[[2plw]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
-[[Category: Plasmodium falciparum 3d7]]
+== Structural highlights ==
-[[Category: Single protein]]
+<table><tr><td colspan='2'>[[2plw]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Plasmodium_falciparum_3D7 Plasmodium falciparum 3D7]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PLW OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2PLW FirstGlance]. <br>
-[[Category: Arrowsmith, C.H.]]
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.7&#8491;</td></tr>
-[[Category: Bochkarev, A.]]
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SAM:S-ADENOSYLMETHIONINE'>SAM</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-[[Category: Edwards, A.M.]]
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2plw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2plw OCA], [https://pdbe.org/2plw PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2plw RCSB], [https://www.ebi.ac.uk/pdbsum/2plw PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2plw ProSAT]</span></td></tr>
-[[Category: Hassanali, A.]]
+</table>
-[[Category: Hui, R.]]
+== Function ==
-[[Category: Kozieradzki, I.]]
+[https://www.uniprot.org/uniprot/Q8IEL9_PLAF7 Q8IEL9_PLAF7]
-[[Category: Lew, J.]]
+== Evolutionary Conservation ==
-[[Category: Lin, L.]]
+[[Image:Consurf_key_small.gif|200px|right]]
-[[Category: Qiu, W.]]
+Check<jmol>
-[[Category: Ravichandran, M.]]
+  <jmolCheckbox>
-[[Category: SGC, Structural.Genomics.Consortium.]]
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/pl/2plw_consurf.spt"</scriptWhenChecked>
-[[Category: Schapira, M.]]
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-[[Category: Sundstrom, M.]]
+    <text>to colour the structure by Evolutionary Conservation</text>
-[[Category: Vedadi, M.]]
+  </jmolCheckbox>
-[[Category: Wasney, G.]]
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2plw ConSurf].
-[[Category: Weigelt, J.]]
+<div style="clear:both"></div>
-[[Category: Wernimont, A.K.]]
+__TOC__
-[[Category: Zhao, Y.]]
+</StructureSection>
-[[Category: SAM]]
+[[Category: Large Structures]]
-[[Category: SO4]]
+[[Category: Plasmodium falciparum 3D7]]
-[[Category: malaria]]
+[[Category: Arrowsmith CH]]
-[[Category: methyltransferase]]
+[[Category: Bochkarev A]]
-[[Category: plasmodium falciparum]]
+[[Category: Edwards AM]]
-[[Category: rna]]
+[[Category: Hassanali A]]
-[[Category: sam]]
+[[Category: Hui R]]
-[[Category: sgc]]
+[[Category: Kozieradzki I]]
-[[Category: structural genomics]]
+[[Category: Lew J]]
-[[Category: structural genomics consortium]]
+[[Category: Lin L]]
+[[Category: Qiu W]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jan 23 15:22:17 2008''
+[[Category: Ravichandran M]]
+[[Category: Schapira M]]
+[[Category: Sundstrom M]]
+[[Category: Vedadi M]]
+[[Category: Wasney G]]
+[[Category: Weigelt J]]
+[[Category: Wernimont AK]]
+[[Category: Zhao Y]]