2pkv: Difference between revisions

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OCA

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-[[Image:2pkv.gif|left|200px]]<br /><applet load="2pkv" size="350" color="white" frame="true" align="right" spinBox="true"
-caption="2pkv, resolution 1.60&Aring;" />
-'''D-(GGTATACC) ambient pressure'''<br />
-==Overview==
+==D-(GGTATACC) ambient pressure==
-The behaviour of the d(GGTATACC) oligonucleotide has been investigated by, X-ray crystallography at 295 K in the range from ambient pressure to 2 GPa, ( approximately 20 000 atm). Four 3D-structures of the A-DNA form (at, ambient pressure, 0.55, 1.09 and 1.39 GPa) were refined at 1.60 or 1.65 A, resolution. In addition to the diffraction pattern of the A-form, the, broad meridional streaks previously explained by occluded B-DNA octamers, within the channels of the crystalline A-form matrix were observed up to, at least 2 GPa. This work highlights an important property of nucleic, acids, their capability to withstand very high pressures, while keeping in, such conditions a nearly invariant geometry of base pairs that store and, carry genetic information. The double-helix base-paired architecture, behaves as a molecular spring, which makes it especially adapted to very, harsh conditions. These features may have contributed to the emergence of, a RNA World at prebiotic stage.
+<StructureSection load='2pkv' size='340' side='right'caption='[[2pkv]], [[Resolution|resolution]] 1.60&Aring;' scene=''>
+== Structural highlights ==
+<table><tr><td colspan='2'>[[2pkv]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PKV OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2PKV FirstGlance]. <br>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.6&#8491;</td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2pkv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2pkv OCA], [https://pdbe.org/2pkv PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2pkv RCSB], [https://www.ebi.ac.uk/pdbsum/2pkv PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2pkv ProSAT]</span></td></tr>
+</table>
+<div style="background-color:#fffaf0;">
+== Publication Abstract from PubMed ==
+The behaviour of the d(GGTATACC) oligonucleotide has been investigated by X-ray crystallography at 295 K in the range from ambient pressure to 2 GPa (approximately 20,000 atm). Four 3D-structures of the A-DNA form (at ambient pressure, 0.55, 1.09 and 1.39 GPa) were refined at 1.60 or 1.65 A resolution. In addition to the diffraction pattern of the A-form, the broad meridional streaks previously explained by occluded B-DNA octamers within the channels of the crystalline A-form matrix were observed up to at least 2 GPa. This work highlights an important property of nucleic acids, their capability to withstand very high pressures, while keeping in such conditions a nearly invariant geometry of base pairs that store and carry genetic information. The double-helix base-paired architecture behaves as a molecular spring, which makes it especially adapted to very harsh conditions. These features may have contributed to the emergence of a RNA World at prebiotic stage.
-==About this Structure==
+Adaptation of the base-paired double-helix molecular architecture to extreme pressure.,Girard E, Prange T, Dhaussy AC, Migianu-Griffoni E, Lecouvey M, Chervin JC, Mezouar M, Kahn R, Fourme R Nucleic Acids Res. 2007;35(14):4800-8. Epub 2007 Jul 7. PMID:17617642<ref>PMID:17617642</ref>
-PKV is a [http://en.wikipedia.org/wiki/Protein_complex Protein complex] structure of sequences from [http://en.wikipedia.org/wiki/ ]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PKV OCA].
-==Reference==
+From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-Adaptation of the base-paired double-helix molecular architecture to extreme pressure., Girard E, Prange T, Dhaussy AC, Migianu-Griffoni E, Lecouvey M, Chervin JC, Mezouar M, Kahn R, Fourme R, Nucleic Acids Res. 2007 Jul 7;. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=17617642 17617642]
+</div>
-[[Category: Protein complex]]
+<div class="pdbe-citations 2pkv" style="background-color:#fffaf0;"></div>
-[[Category: Fourme, R.]]
+== References ==
-[[Category: Girard, E.]]
+<references/>
-[[Category: Kahn, R.]]
+__TOC__
-[[Category: Prange, T.]]
+</StructureSection>
-[[Category: crystal structure]]
+[[Category: Large Structures]]
-[[Category: dna]]
+[[Category: Fourme R]]
-[[Category: high pressure]]
+[[Category: Girard E]]
+[[Category: Kahn R]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jan 23 13:37:23 2008''
+[[Category: Prange T]]