2p3e: Difference between revisions

From Proteopedia
Jump to navigation Jump to search
← Older edit
No edit summary
No edit summary
 
(11 intermediate revisions by the same user not shown)
Line 1: Line 1:
[[Image:2p3e.gif|left|200px]]


<!--
==Crystal structure of AQ1208 from Aquifex aeolicus==
The line below this paragraph, containing "STRUCTURE_2p3e", creates the "Structure Box" on the page.
<StructureSection load='2p3e' size='340' side='right'caption='[[2p3e]], [[Resolution|resolution]] 1.99&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[2p3e]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Aquifex_aeolicus_VF5 Aquifex aeolicus VF5]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2P3E OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2P3E FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.99&#8491;</td></tr>
-->
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2p3e FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2p3e OCA], [https://pdbe.org/2p3e PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2p3e RCSB], [https://www.ebi.ac.uk/pdbsum/2p3e PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2p3e ProSAT], [https://www.topsan.org/Proteins/RSGI/2p3e TOPSAN]</span></td></tr>
{{STRUCTURE_2p3e|  PDB=2p3e  |  SCENE= }}
</table>
 
== Function ==
'''Crystal structure of AQ1208 from Aquifex aeolicus'''
[https://www.uniprot.org/uniprot/DCDA_AQUAE DCDA_AQUAE] Specifically catalyzes the decarboxylation of meso-diaminopimelate (meso-DAP) to L-lysine (By similarity).[HAMAP-Rule:MF_02120]
 
== Evolutionary Conservation ==
 
[[Image:Consurf_key_small.gif|200px|right]]
==About this Structure==
Check<jmol>
2P3E is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Aquifex_aeolicus Aquifex aeolicus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2P3E OCA].  
  <jmolCheckbox>
[[Category: Aquifex aeolicus]]
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/p3/2p3e_consurf.spt"</scriptWhenChecked>
[[Category: Diaminopimelate decarboxylase]]
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
[[Category: Single protein]]
    <text>to colour the structure by Evolutionary Conservation</text>
[[Category: Chen, L.]]
  </jmolCheckbox>
[[Category: Ebihara, A.]]
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2p3e ConSurf].
[[Category: Fu, Z-Q.]]
<div style="clear:both"></div>
[[Category: II, J T.Swindell.]]
__TOC__
[[Category: Kuramitsu, S.]]
</StructureSection>
[[Category: RSGI, RIKEN Structural Genomics/Proteomics Initiative.]]
[[Category: Aquifex aeolicus VF5]]
[[Category: Rose, J P.]]
[[Category: Large Structures]]
[[Category: SECSG, Southeast Collaboratory for Structural Genomics.]]
[[Category: Chen L]]
[[Category: Shinkai, A.]]
[[Category: Ebihara A]]
[[Category: Wang, B-C.]]
[[Category: Fu Z-Q]]
[[Category: Yokoyama, S.]]
[[Category: Kuramitsu S]]
[[Category: Zhu, J.]]
[[Category: Rose JP]]
[[Category: Aq1208]]
[[Category: Shinkai A]]
[[Category: Aquifex aeolicus]]
[[Category: Swindell II JT]]
[[Category: Department of biological sciences osaka university]]
[[Category: Wang B-C]]
[[Category: Department of biophysics and biochemistry university of tokyo]]
[[Category: Yokoyama S]]
[[Category: Protein structure initiative]]
[[Category: Zhu J]]
[[Category: Psi]]
[[Category: Riken genomic sciences center]]
[[Category: Riken spring-8 center]]
[[Category: Riken structural genomics/proteomics initiative]]
[[Category: Rsgi]]
[[Category: Secsg]]
[[Category: Southeast collaboratory for structural genomic]]
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun May  4 12:15:44 2008''

Latest revision as of 13:53, 30 August 2023

Crystal structure of AQ1208 from Aquifex aeolicusCrystal structure of AQ1208 from Aquifex aeolicus

Structural highlights

2p3e is a 2 chain structure with sequence from Aquifex aeolicus VF5. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 1.99Å
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT, TOPSAN

Function

DCDA_AQUAE Specifically catalyzes the decarboxylation of meso-diaminopimelate (meso-DAP) to L-lysine (By similarity).[HAMAP-Rule:MF_02120]

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

2p3e, resolution 1.99Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA
Retrieved from "https://proteopedia.openfox.io/wiki/index.php?title=2p3e&oldid=3853482"