2p3e: Difference between revisions

← Older edit

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA

@@ Line 1: / Line 1: @@
-[[Image:2p3e.gif|left|200px]]
- {{Structure
+==Crystal structure of AQ1208 from Aquifex aeolicus==
-|PDB= 2p3e |SIZE=350|CAPTION= <scene name='initialview01'>2p3e</scene>, resolution 1.99&Aring;
+<StructureSection load='2p3e' size='340' side='right'caption='[[2p3e]], [[Resolution|resolution]] 1.99&Aring;' scene=''>
-|SITE=
+== Structural highlights ==
-|LIGAND=
+<table><tr><td colspan='2'>[[2p3e]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Aquifex_aeolicus_VF5 Aquifex aeolicus VF5]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2P3E OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2P3E FirstGlance]. <br>
-|ACTIVITY= [http://en.wikipedia.org/wiki/Diaminopimelate_decarboxylase Diaminopimelate decarboxylase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.1.1.20 4.1.1.20]
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.99&#8491;</td></tr>
-|GENE= lysA, aq_1208 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=63363 Aquifex aeolicus])
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2p3e FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2p3e OCA], [https://pdbe.org/2p3e PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2p3e RCSB], [https://www.ebi.ac.uk/pdbsum/2p3e PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2p3e ProSAT], [https://www.topsan.org/Proteins/RSGI/2p3e TOPSAN]</span></td></tr>
-}}
+</table>
+== Function ==
-'''Crystal structure of AQ1208 from Aquifex aeolicus'''
+[https://www.uniprot.org/uniprot/DCDA_AQUAE DCDA_AQUAE] Specifically catalyzes the decarboxylation of meso-diaminopimelate (meso-DAP) to L-lysine (By similarity).[HAMAP-Rule:MF_02120]
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
-==About this Structure==
+Check<jmol>
-P3E is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Aquifex_aeolicus Aquifex aeolicus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2P3E OCA].
+  <jmolCheckbox>
-[[Category: Aquifex aeolicus]]
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/p3/2p3e_consurf.spt"</scriptWhenChecked>
-[[Category: Diaminopimelate decarboxylase]]
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-[[Category: Single protein]]
+    <text>to colour the structure by Evolutionary Conservation</text>
-[[Category: Chen, L.]]
+  </jmolCheckbox>
-[[Category: Ebihara, A.]]
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2p3e ConSurf].
-[[Category: Fu, Z-Q.]]
+<div style="clear:both"></div>
-[[Category: II, J T.Swindell.]]
+__TOC__
-[[Category: Kuramitsu, S.]]
+</StructureSection>
-[[Category: RSGI, RIKEN Structural Genomics/Proteomics Initiative.]]
+[[Category: Aquifex aeolicus VF5]]
-[[Category: Rose, J P.]]
+[[Category: Large Structures]]
-[[Category: SECSG, Southeast Collaboratory for Structural Genomics.]]
+[[Category: Chen L]]
-[[Category: Shinkai, A.]]
+[[Category: Ebihara A]]
-[[Category: Wang, B-C.]]
+[[Category: Fu Z-Q]]
-[[Category: Yokoyama, S.]]
+[[Category: Kuramitsu S]]
-[[Category: Zhu, J.]]
+[[Category: Rose JP]]
-[[Category: aq1208]]
+[[Category: Shinkai A]]
-[[Category: aquifex aeolicus]]
+[[Category: Swindell II JT]]
-[[Category: department of biological sciences osaka university]]
+[[Category: Wang B-C]]
-[[Category: department of biophysics and biochemistry university of tokyo]]
+[[Category: Yokoyama S]]
-[[Category: protein structure initiative]]
+[[Category: Zhu J]]
-[[Category: psi]]
-[[Category: riken genomic sciences center]]
-[[Category: riken spring-8 center]]
-[[Category: riken structural genomics/proteomics initiative]]
-[[Category: rsgi]]
-[[Category: secsg]]
-[[Category: southeast collaboratory for structural genomic]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 18:08:03 2008''