2p3e: Difference between revisions

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-[[Image:2p3e.png|left|200px]]
-{{STRUCTURE_2p3e|  PDB=2p3e  |  SCENE=  }}
+==Crystal structure of AQ1208 from Aquifex aeolicus==
+<StructureSection load='2p3e' size='340' side='right'caption='[[2p3e]], [[Resolution|resolution]] 1.99&Aring;' scene=''>
-===Crystal structure of AQ1208 from Aquifex aeolicus===
+== Structural highlights ==
+<table><tr><td colspan='2'>[[2p3e]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Aquifex_aeolicus_VF5 Aquifex aeolicus VF5]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2P3E OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2P3E FirstGlance]. <br>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.99&#8491;</td></tr>
-==About this Structure==
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2p3e FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2p3e OCA], [https://pdbe.org/2p3e PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2p3e RCSB], [https://www.ebi.ac.uk/pdbsum/2p3e PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2p3e ProSAT], [https://www.topsan.org/Proteins/RSGI/2p3e TOPSAN]</span></td></tr>
-[[2p3e]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Aquifex_aeolicus Aquifex aeolicus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2P3E OCA].
+</table>
-[[Category: Aquifex aeolicus]]
+== Function ==
-[[Category: Diaminopimelate decarboxylase]]
+[https://www.uniprot.org/uniprot/DCDA_AQUAE DCDA_AQUAE] Specifically catalyzes the decarboxylation of meso-diaminopimelate (meso-DAP) to L-lysine (By similarity).[HAMAP-Rule:MF_02120]
-[[Category: Chen, L.]]
+== Evolutionary Conservation ==
-[[Category: Ebihara, A.]]
+[[Image:Consurf_key_small.gif|200px|right]]
-[[Category: Fu, Z-Q.]]
+Check<jmol>
-[[Category: II, J T.Swindell.]]
+  <jmolCheckbox>
-[[Category: Kuramitsu, S.]]
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/p3/2p3e_consurf.spt"</scriptWhenChecked>
-[[Category: RSGI, RIKEN Structural Genomics/Proteomics Initiative.]]
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-[[Category: Rose, J P.]]
+    <text>to colour the structure by Evolutionary Conservation</text>
-[[Category: SECSG, Southeast Collaboratory for Structural Genomics.]]
+  </jmolCheckbox>
-[[Category: Shinkai, A.]]
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2p3e ConSurf].
-[[Category: Wang, B-C.]]
+<div style="clear:both"></div>
-[[Category: Yokoyama, S.]]
+__TOC__
-[[Category: Zhu, J.]]
+</StructureSection>
-[[Category: Aq1208]]
+[[Category: Aquifex aeolicus VF5]]
-[[Category: Aquifex aeolicus]]
+[[Category: Large Structures]]
-[[Category: Department of biological sciences osaka university]]
+[[Category: Chen L]]
-[[Category: Department of biophysics and biochemistry university of tokyo]]
+[[Category: Ebihara A]]
-[[Category: Lyase]]
+[[Category: Fu Z-Q]]
-[[Category: Protein structure initiative]]
+[[Category: Kuramitsu S]]
-[[Category: Psi]]
+[[Category: Rose JP]]
-[[Category: Riken genomic sciences center]]
+[[Category: Shinkai A]]
-[[Category: Riken spring-8 center]]
+[[Category: Swindell II JT]]
-[[Category: Riken structural genomics/proteomics initiative]]
+[[Category: Wang B-C]]
-[[Category: Rsgi]]
+[[Category: Yokoyama S]]
-[[Category: Secsg]]
+[[Category: Zhu J]]
-[[Category: Southeast collaboratory for structural genomic]]