2ox4: Difference between revisions

From Proteopedia
Jump to navigation Jump to search
← Older edit
No edit summary
No edit summary
 
(11 intermediate revisions by the same user not shown)
Line 1: Line 1:
[[Image:2ox4.jpg|left|200px]]


{{Structure
==Crystal structure of putative dehydratase from Zymomonas mobilis ZM4==
|PDB= 2ox4 |SIZE=350|CAPTION= <scene name='initialview01'>2ox4</scene>, resolution 1.80&Aring;
<StructureSection load='2ox4' size='340' side='right'caption='[[2ox4]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
|SITE=  
== Structural highlights ==
|LIGAND= <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>
<table><tr><td colspan='2'>[[2ox4]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Zymomonas_mobilis Zymomonas mobilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OX4 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2OX4 FirstGlance]. <br>
|ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/Mandelate_racemase Mandelate racemase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=5.1.2.2 5.1.2.2] </span>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8&#8491;</td></tr>
|GENE= rspA, ZMO1264 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=542 Zymomonas mobilis])
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd03317 NAAAR], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd03316 MR_like]</span>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2ox4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ox4 OCA], [https://pdbe.org/2ox4 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2ox4 RCSB], [https://www.ebi.ac.uk/pdbsum/2ox4 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2ox4 ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/2ox4 TOPSAN]</span></td></tr>
|RELATEDENTRY=
</table>
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ox4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ox4 OCA], [http://www.ebi.ac.uk/pdbsum/2ox4 PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2ox4 RCSB]</span>
== Function ==
}}
[https://www.uniprot.org/uniprot/Q5NN22_ZYMMO Q5NN22_ZYMMO]
 
== Evolutionary Conservation ==
'''Crystal structure of putative dehydratase from Zymomonas mobilis ZM4'''
[[Image:Consurf_key_small.gif|200px|right]]
 
Check<jmol>
 
  <jmolCheckbox>
==About this Structure==
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ox/2ox4_consurf.spt"</scriptWhenChecked>
2OX4 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Zymomonas_mobilis Zymomonas mobilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OX4 OCA].  
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
[[Category: Mandelate racemase]]
    <text>to colour the structure by Evolutionary Conservation</text>
[[Category: Single protein]]
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2ox4 ConSurf].
<div style="clear:both"></div>
__TOC__
</StructureSection>
[[Category: Large Structures]]
[[Category: Zymomonas mobilis]]
[[Category: Zymomonas mobilis]]
[[Category: Almo, S C.]]
[[Category: Almo SC]]
[[Category: Bain, K.]]
[[Category: Bain K]]
[[Category: Burley, S K.]]
[[Category: Burley SK]]
[[Category: Freeman, J C.]]
[[Category: Freeman JC]]
[[Category: Gerlt, J.]]
[[Category: Gerlt J]]
[[Category: Gheyi, T.]]
[[Category: Gheyi T]]
[[Category: NYSGXRC, New York Structural GenomiX Research Consortium.]]
[[Category: Patskovsky Y]]
[[Category: Patskovsky, Y.]]
[[Category: Sauder JM]]
[[Category: Sauder, J M.]]
[[Category: Smith D]]
[[Category: Smith, D.]]
[[Category: Toro R]]
[[Category: Toro, R.]]
[[Category: Wasserman SR]]
[[Category: Wasserman, S R.]]
[[Category: dehydratase]]
[[Category: enolase]]
[[Category: new york structural genomics research consortium]]
[[Category: new york structural genomix research consortium]]
[[Category: nysgrc]]
[[Category: nysgxrc]]
[[Category: protein structure initiative]]
[[Category: psi]]
[[Category: structural genomic]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 04:24:29 2008''

Latest revision as of 13:49, 30 August 2023

Crystal structure of putative dehydratase from Zymomonas mobilis ZM4Crystal structure of putative dehydratase from Zymomonas mobilis ZM4

Structural highlights

2ox4 is a 8 chain structure with sequence from Zymomonas mobilis. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 1.8Å
Ligands:, ,
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT, TOPSAN

Function

Q5NN22_ZYMMO

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

2ox4, resolution 1.80Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA
Retrieved from "https://proteopedia.openfox.io/wiki/index.php?title=2ox4&oldid=3853267"