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[[Image:2oog.gif|left|200px]]


{{Structure
==Crystal structure of glycerophosphoryl diester phosphodiesterase from Staphylococcus aureus==
|PDB= 2oog |SIZE=350|CAPTION= <scene name='initialview01'>2oog</scene>, resolution 2.20&Aring;
<StructureSection load='2oog' size='340' side='right'caption='[[2oog]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
|SITE=  
== Structural highlights ==
|LIGAND= <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene>
<table><tr><td colspan='2'>[[2oog]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Staphylococcus_aureus_subsp._aureus_N315 Staphylococcus aureus subsp. aureus N315]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OOG OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2OOG FirstGlance]. <br>
|ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/Glycerophosphodiester_phosphodiesterase Glycerophosphodiester phosphodiesterase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.4.46 3.1.4.46] </span>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.2&#8491;</td></tr>
|GENE= glpQ, SA0820 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1280 Staphylococcus aureus])
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=pfam03009 GDPD], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG0584 UgpQ]</span>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2oog FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2oog OCA], [https://pdbe.org/2oog PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2oog RCSB], [https://www.ebi.ac.uk/pdbsum/2oog PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2oog ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/2oog TOPSAN]</span></td></tr>
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2oog FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2oog OCA], [http://www.ebi.ac.uk/pdbsum/2oog PDBsum], [http://www.fli-leibniz.de/cgi-bin/ImgLib.pl?CODE=1kfv JenaLib], [http://www.rcsb.org/pdb/explore.do?structureId=2oog RCSB]</span>
</table>
}}
== Function ==
[https://www.uniprot.org/uniprot/A0A0H3K7S1_STAAE A0A0H3K7S1_STAAE]
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/oo/2oog_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2oog ConSurf].
<div style="clear:both"></div>


'''Crystal structure of glycerophosphoryl diester phosphodiesterase from Staphylococcus aureus'''
==See Also==
 
*[[Phosphodiesterase 3D structures|Phosphodiesterase 3D structures]]
 
__TOC__
==About this Structure==
</StructureSection>
2OOG is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Staphylococcus_aureus Staphylococcus aureus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OOG OCA].
[[Category: Large Structures]]
[[Category: Glycerophosphodiester phosphodiesterase]]
[[Category: Staphylococcus aureus subsp. aureus N315]]
[[Category: Single protein]]
[[Category: Almo SC]]
[[Category: Staphylococcus aureus]]
[[Category: Burley SK]]
[[Category: Almo, S C.]]
[[Category: Fedorov E]]
[[Category: Burley, S K.]]
[[Category: Freeman J]]
[[Category: Fedorov, E.]]
[[Category: Gheyi T]]
[[Category: Freeman, J.]]
[[Category: Maletic M]]
[[Category: Gheyi, T.]]
[[Category: Patskovsky Y]]
[[Category: Maletic, M.]]
[[Category: Powell A]]
[[Category: NYSGXRC, New York Structural GenomiX Research Consortium.]]
[[Category: Sauder JM]]
[[Category: Patskovsky, Y.]]
[[Category: Smith D]]
[[Category: Powell, A.]]
[[Category: Toro R]]
[[Category: Sauder, J M.]]
[[Category: Wasserman SR]]
[[Category: Smith, D.]]
[[Category: Toro, R.]]
[[Category: Wasserman, S R.]]
[[Category: glycerophosphoryl diester phosphodiesterase]]
[[Category: hydrolase]]
[[Category: new york structural genomix research consortium]]
[[Category: nysgrc]]
[[Category: nysgxrc]]
[[Category: phosphatase]]
[[Category: protein structure initiative]]
[[Category: psi]]
[[Category: structural genomic]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Mar 26 06:37:06 2008''

Latest revision as of 13:46, 30 August 2023

Crystal structure of glycerophosphoryl diester phosphodiesterase from Staphylococcus aureusCrystal structure of glycerophosphoryl diester phosphodiesterase from Staphylococcus aureus

Structural highlights

2oog is a 6 chain structure with sequence from Staphylococcus aureus subsp. aureus N315. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 2.2Å
Ligands:, ,
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT, TOPSAN

Function

A0A0H3K7S1_STAAE

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

See Also

2oog, resolution 2.20Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA
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