2oog: Difference between revisions

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[[Image:2oog.png|left|200px]]


{{STRUCTURE_2oog|  PDB=2oog  |  SCENE=  }}
==Crystal structure of glycerophosphoryl diester phosphodiesterase from Staphylococcus aureus==
 
<StructureSection load='2oog' size='340' side='right'caption='[[2oog]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
===Crystal structure of glycerophosphoryl diester phosphodiesterase from Staphylococcus aureus===
== Structural highlights ==
 
<table><tr><td colspan='2'>[[2oog]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Staphylococcus_aureus_subsp._aureus_N315 Staphylococcus aureus subsp. aureus N315]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OOG OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2OOG FirstGlance]. <br>
 
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.2&#8491;</td></tr>
==About this Structure==
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
[[2oog]] is a 6 chain structure of [[Phosphodiesterase]] with sequence from [http://en.wikipedia.org/wiki/Staphylococcus_aureus_subsp._aureus Staphylococcus aureus subsp. aureus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OOG OCA].  
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2oog FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2oog OCA], [https://pdbe.org/2oog PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2oog RCSB], [https://www.ebi.ac.uk/pdbsum/2oog PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2oog ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/2oog TOPSAN]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/A0A0H3K7S1_STAAE A0A0H3K7S1_STAAE]
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/oo/2oog_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2oog ConSurf].
<div style="clear:both"></div>


==See Also==
==See Also==
*[[Phosphodiesterase|Phosphodiesterase]]
*[[Phosphodiesterase 3D structures|Phosphodiesterase 3D structures]]
[[Category: Glycerophosphodiester phosphodiesterase]]
__TOC__
[[Category: Staphylococcus aureus subsp. aureus]]
</StructureSection>
[[Category: Almo, S C.]]
[[Category: Large Structures]]
[[Category: Burley, S K.]]
[[Category: Staphylococcus aureus subsp. aureus N315]]
[[Category: Fedorov, E.]]
[[Category: Almo SC]]
[[Category: Freeman, J.]]
[[Category: Burley SK]]
[[Category: Gheyi, T.]]
[[Category: Fedorov E]]
[[Category: Maletic, M.]]
[[Category: Freeman J]]
[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics.]]
[[Category: Gheyi T]]
[[Category: Patskovsky, Y.]]
[[Category: Maletic M]]
[[Category: Powell, A.]]
[[Category: Patskovsky Y]]
[[Category: Sauder, J M.]]
[[Category: Powell A]]
[[Category: Smith, D.]]
[[Category: Sauder JM]]
[[Category: Toro, R.]]
[[Category: Smith D]]
[[Category: Wasserman, S R.]]
[[Category: Toro R]]
[[Category: Glycerophosphoryl diester phosphodiesterase]]
[[Category: Wasserman SR]]
[[Category: Hydrolase]]
[[Category: New york sgx research center for structural genomic]]
[[Category: Nysgrc]]
[[Category: Nysgxrc]]
[[Category: Phosphatase]]
[[Category: Protein structure initiative]]
[[Category: Psi]]
[[Category: Structural genomic]]

Latest revision as of 13:46, 30 August 2023

Crystal structure of glycerophosphoryl diester phosphodiesterase from Staphylococcus aureusCrystal structure of glycerophosphoryl diester phosphodiesterase from Staphylococcus aureus

Structural highlights

2oog is a 6 chain structure with sequence from Staphylococcus aureus subsp. aureus N315. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 2.2Å
Ligands:, ,
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT, TOPSAN

Function

A0A0H3K7S1_STAAE

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

See Also

2oog, resolution 2.20Å

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Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA
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