2nqb: Difference between revisions

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[[Image:2nqb.gif|left|200px]]


{{Structure
==Drosophila Nucleosome Structure==
|PDB= 2nqb |SIZE=350|CAPTION= <scene name='initialview01'>2nqb</scene>, resolution 2.3&Aring;
<StructureSection load='2nqb' size='340' side='right'caption='[[2nqb]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
|SITE=
== Structural highlights ==
|LIGAND= <scene name='pdbligand=DA:2&#39;-DEOXYADENOSINE-5&#39;-MONOPHOSPHATE'>DA</scene>, <scene name='pdbligand=DC:2&#39;-DEOXYCYTIDINE-5&#39;-MONOPHOSPHATE'>DC</scene>, <scene name='pdbligand=DG:2&#39;-DEOXYGUANOSINE-5&#39;-MONOPHOSPHATE'>DG</scene>, <scene name='pdbligand=DT:THYMIDINE-5&#39;-MONOPHOSPHATE'>DT</scene>
<table><tr><td colspan='2'>[[2nqb]] is a 10 chain structure with sequence from [https://en.wikipedia.org/wiki/Drosophila_melanogaster Drosophila melanogaster] and [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2NQB OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2NQB FirstGlance]. <br>
|ACTIVITY=
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.3&#8491;</td></tr>
|GENE= His3 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 Homo sapiens]), His4 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=7227 Drosophila melanogaster]), His2A ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=7227 Drosophila melanogaster]), His2B ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=7227 Drosophila melanogaster])
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2nqb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2nqb OCA], [https://pdbe.org/2nqb PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2nqb RCSB], [https://www.ebi.ac.uk/pdbsum/2nqb PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2nqb ProSAT]</span></td></tr>
|DOMAIN=
</table>
|RELATEDENTRY=[[1aoi|1AOI]], [[1id3|1ID3]], [[2cv5|2CV5]]
== Function ==
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2nqb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2nqb OCA], [http://www.ebi.ac.uk/pdbsum/2nqb PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2nqb RCSB]</span>
[https://www.uniprot.org/uniprot/H3_DROME H3_DROME]
}}
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/nq/2nqb_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2nqb ConSurf].
<div style="clear:both"></div>


'''Drosophila Nucleosome Structure'''
==See Also==
 
*[[Histone 3D structures|Histone 3D structures]]
 
__TOC__
==About this Structure==
</StructureSection>
2NQB is a [[Protein complex]] structure of sequences from [http://en.wikipedia.org/wiki/Drosophila_melanogaster Drosophila melanogaster] and [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2NQB OCA].
[[Category: Drosophila melanogaster]]
[[Category: Drosophila melanogaster]]
[[Category: Homo sapiens]]
[[Category: Homo sapiens]]
[[Category: Protein complex]]
[[Category: Large Structures]]
[[Category: Chakravarthy, S.]]
[[Category: Chakravarthy S]]
[[Category: Luger, K.]]
[[Category: Luger K]]
[[Category: chromatin]]
[[Category: histone]]
[[Category: ncp]]
[[Category: nucleosome]]
[[Category: structural protein/dna complex]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 04:06:46 2008''

Latest revision as of 13:18, 30 August 2023

Drosophila Nucleosome StructureDrosophila Nucleosome Structure

Structural highlights

2nqb is a 10 chain structure with sequence from Drosophila melanogaster and Homo sapiens. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 2.3Å
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

H3_DROME

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

See Also

2nqb, resolution 2.30Å

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OCA
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