2igi: Difference between revisions

← Older edit

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA

@@ Line 1: / Line 1: @@
-{{Seed}}
-[[Image:2igi.png|left|200px]]
-<!--
+==Crystal Structure of E. coli Oligoribonuclease==
-The line below this paragraph, containing "STRUCTURE_2igi", creates the "Structure Box" on the page.
+<StructureSection load='2igi' size='340' side='right'caption='[[2igi]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[2igi]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_K-12 Escherichia coli K-12]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2IGI OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2IGI FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.7&#8491;</td></tr>
--->
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACY:ACETIC+ACID'>ACY</scene>, <scene name='pdbligand=CD:CADMIUM+ION'>CD</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-{{STRUCTURE_2igi|  PDB=2igi  |  SCENE=  }}
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2igi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2igi OCA], [https://pdbe.org/2igi PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2igi RCSB], [https://www.ebi.ac.uk/pdbsum/2igi PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2igi ProSAT]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/ORN_ECOLI ORN_ECOLI] 3'-to-5' exoribonuclease specific for small oligoribonucleotides 2 to 5 nucleotides in length, as well as small (2 to 5 nucleotides) ssDNA oligomers. Probably responsible for the final step in mRNA degradation.<ref>PMID:9573169</ref> <ref>PMID:7608090</ref> <ref>PMID:16682444</ref>
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ig/2igi_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2igi ConSurf].
+<div style="clear:both"></div>
-===Crystal Structure of E. coli Oligoribonuclease===
+==See Also==
+*[[Exonuclease 3D structures|Exonuclease 3D structures]]
+*[[Ribonuclease 3D structures|Ribonuclease 3D structures]]
-==About this Structure==
+== References ==
-IGI is a 2 chains structure of sequences from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2IGI OCA].
+<references/>
-[[Category: Escherichia coli]]
+__TOC__
-[[Category: Malhotra, A.]]
+</StructureSection>
-[[Category: Zuo, Y.]]
+[[Category: Escherichia coli K-12]]
-[[Category: Exonuclease]]
+[[Category: Large Structures]]
-[[Category: Exoribonuclease]]
+[[Category: Malhotra A]]
-[[Category: Hydrolase]]
+[[Category: Zuo Y]]
-[[Category: Mrna decay]]
-[[Category: Nuclease]]
-[[Category: Ribonuclease]]
-[[Category: Rnase]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 20:38:03 2009''