Phosphoenolpyruvate carboxylase: Difference between revisions

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== Allosteric regulation and reaction mechanism ==
== Allosteric regulation and reaction mechanism ==


PEPC’s carboxylase activity is regulated by different post-translational mechanisms. In C4 and CAM plants, the phosphorylation of a serine residue near the N terminus (S15 in maize C4-PEPC) activates the enzyme by decreasing its sensitivity to allosteric inhibitors such as aspartate and malate and increasing activation by the positive allosteric regulator glucose 6-phosphate <ref name="O'Leary2011"/>. Studies on'' F. pringlei'' and ''F. trinervia'', have positively identified the residues Arg641, Lys829, Arg888 and Asn964 as binding motif of the negative allosteric inhibitors aspartate and malate <ref name="Paulus2013"/>. Similar studies have also identified the <scene name='57/573979/Cv/7'>aspartate binding site</scene> site in maize <ref name="matsumura2002"/>. In C3 PEPC, Arg884 provides an additional hydrogen bond for inhibitor binding, whereas in C4 PEPC isoforms the substitution of this residue by a glycine, reducing the enzymes sensitivity towards both feedback inhibitors <ref>PMID: 21491491</ref><ref name="Paulus2013"/>. The positive allosteric effector glucose 6-phosphate’s binding site has also been identified in the C4-PEPC of maize. X-ray crystallography of maize’s C4-PEPC in complex with sulfate ion (a positive effector analog of  glucose 6-phosphate) revealed that the positive effector was bound to the enzyme at the dimer interface and was surrounded by four positively charged residues (R183, R184, R231, and R372 in the adjacent subunit <ref name="kai2003"/>.
PEPC’s carboxylase activity is regulated by different post-translational mechanisms. In C4 and CAM plants, the phosphorylation of a serine residue near the N terminus (S15 in maize C4-PEPC) activates the enzyme by decreasing its sensitivity to allosteric inhibitors such as aspartate and malate and increasing activation by the positive allosteric regulator glucose 6-phosphate <ref name="O'Leary2011"/>. Studies on'' F. pringlei'' and ''F. trinervia'', have positively identified the residues Arg641, Lys829, Arg888 and Asn964 as binding motif of the negative allosteric inhibitors aspartate and malate <ref name="Paulus2013"/>. Similar studies have also identified the <scene name='57/573979/Cv/8'>aspartate binding site</scene> site in maize <ref name="matsumura2002"/>. In C3 PEPC, Arg884 provides an additional hydrogen bond for inhibitor binding, whereas in C4 PEPC isoforms the substitution of this residue by a glycine, reducing the enzymes sensitivity towards both feedback inhibitors <ref>PMID: 21491491</ref><ref name="Paulus2013"/>. The positive allosteric effector glucose 6-phosphate’s binding site has also been identified in the C4-PEPC of maize. X-ray crystallography of maize’s C4-PEPC in complex with sulfate ion (a positive effector analog of  glucose 6-phosphate) revealed that the positive effector was bound to the enzyme at the dimer interface and was surrounded by four positively charged residues (R183, R184, R231, and R372 in the adjacent subunit <ref name="kai2003"/>.


[[Image:Inhibitor-binding_site_of_Flaverina_trinervia_C4_PEPC.png|center|frame|caption position=bottom|'''Figure 4''' Inhibitor-binding site of ''Flaverina trinervia’s'' C4 PEPC. Adapted from Paulus et al. 2013. <ref name="Paulus2013"/>]]
[[Image:Inhibitor-binding_site_of_Flaverina_trinervia_C4_PEPC.png|center|frame|caption position=bottom|'''Figure 4''' Inhibitor-binding site of ''Flaverina trinervia’s'' C4 PEPC. Adapted from Paulus et al. 2013. <ref name="Paulus2013"/>]]
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'''''Arabidopsis thaliana'''''<br>
'''''Arabidopsis thaliana'''''<br>
[[5fdn]] – AtPEPC 3 + aspartate + citrate<br>
[[8oj9]] – AtPEPC 1  <br />
[[8ojf]] – AtPEPC 1 + phosphate <br />
[[8oje]] – AtPEPC 1 + malate <br />
[[5fdn]] – AtPEPC 3 + aspartate + citrate <br />


'''''Flaveria pringlei'''''<br>
'''''Flaveria pringlei'''''<br>

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

Michal Harel, Alexander Berchansky, Joel L. Sussman, Lucas Xavier da Cunha, Karsten Theis