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Histone 3D structures: Difference between revisions

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{{#tree:id=OrganizedByTopic|openlevels=0|


*Histone
*Histones


**[[1yqa]] – yH1 (mutant) – yeast – NMR<BR />
**[[2xd7]], [[1zr3]], [[2fxk]], [[1zr5]] – hH2A macro domain – human<br />
**[[1uss]], [[1ust]], [[1uhm]] – yH1 globular domain - NMR<BR />
**[[6hq1]] – hH1.0 - NMR<br />
**[[1ghc]] – cH1 – chicken - NMR<br />
**[[2xd7]], [[1zr3]], [[1zr5]], [[2fxk]] – hH2A macro domain – human<BR />
**[[4cay]] – hH2A +H2B<br />
**[[4cay]] – hH2A +H2B<br />
**[[1yd9]] – H2A macro domain – rat<BR />
**[[1yd9]] – H2A macro domain – rat<br />
**[[1ku5]] – HPHA – ''Pyrococcus horikoshii''<BR />
**[[1ghc]] – cH1 – chicken – NMR<br />
**[[1b67]], [[1b6w]], [[1a7w]], [[1hta]] – MfHMFA – ''Methanococcus fervidus''<BR />
**[[1hst]] – cH5<br />
**[[1bfm]] – MfHB - NMR<BR />
**[[2xql]], [[3c9k]] - cH3.2 + H4 + H2A + H2B – Cryo EM<br />
**[[1f1e]] – H – ''Methanopyrus kandleri''<BR />
**[[6k01]], [[6w4l]] - XlH2A/H2B - ''Xenopus laevis'' <br />
**[[1hst]] – cH5 <BR />
**[[7pj1]] – DmH2A + H2B – ''Drosophila melanogaster'' - NMR<br />
**[[3iid]], [[3iif]] – H2A macro domain + ADP-ribose<BR />
**[[6k03]] - CeH2A + H2B – ''Caenorhabditis elegans''<br />
**[[2g9a]], [[2g99]], [[2h13]] – H3 + WD-repeat protein<br />
**[[1yqa]] – yH1 (mutant) – yeast – NMR<br />
**[[1pfb]] – H3 + polycomb protein – ''Strongylocentrus purpuratus''
**[[1uss]], [[1ust]], [[1uhm]] – yH1 globular domain – NMR<br />
**[[1ku5]] – HPHA – ''Pyrococcus horikoshii''<br />
**[[1b67]], [[1b6w]], [[1a7w]], [[1hta]] – MfHMFA – ''Methanococcus fervidus''<br />
**[[1bfm]] – MfHB - NMR<br />
**[[1f1e]] – H – ''Methanopyrus kandleri''<br />


*Nucleosome core
*Histones complex with protein


**[[6n89]], [[6n88]] – hH1 + importin – Cryo EM<br />
**[[6n89]], [[6n88]] – hH1.0 + importin – Cryo EM<br />
**[[6h8p]] – hH1 + histone-lysine methyltransferase <br />
**[[6h8p]] – hH1 + histone-lysine methyltransferase <br />
**[[3r45]] - hH4 + H3-like centromeric protein + Holliday junction recognition protein<BR />
**[[3r45]] - hH4 + H3-like centromeric protein + Holliday junction recognition protein<br />
**[[3nqj]], [[3nqu]] - hH4 + H3-like centromeric protein<BR />
**[[3nqj]], [[3nqu]] - hH4 + H3-like centromeric protein<br />
**[[5vey]] - hH2A + H2B + polyubiquitin<br />
**[[5vey]] - hH2A + H2B + polyubiquitin<br />
**[[5fug]] - hH2A + H2B + YL-1<br />
**[[5fug]] - hH2A + H2B + YL-1<br />
**[[4nft]] - hH2A + H2B + ANP32E<br />
**[[4nft]] - hH2A + H2B + ANP32E<br />
**[[6kbb]] - hH2A + H2B + SWR-complex protein<br />
**[[6miq]], [[6mio]], [[6min]] – hH3 + TFIID<br />
**[[6miq]], [[6mio]], [[6min]] – hH3 + TFIID<br />
**[[6mim]], [[6mil]] – hH3 + AF9<br />
**[[6mim]], [[6mil]] – hH3 + AF9<br />
**[[7v6q]] – hH3.1 + H4 + NASP + ASF1A<br />
**[[7vcl]] – hH2A + H2B + BKRF4<br />
**[[8i17]] – hH2A + H2B + SPT16<br />
**[[7qxb]], [[7trf]] – hH2A + H2B + telomerase reverse transcriptase + RNA – Cryo EM<br />
**[[7qxa]] – hH2A + H2B + telomerase reverse transcriptase + adrenocortical dysplasia protein + RNA – Cryo EM<br />
**[[8h0v]], [[8h0w]] – hH2A + H2B + H4 + H1.2 in RNA polymerase complex – Cryo EM<br />
**[[5ja4]], [[5bnv]] – hH3.3 + H4 + TONSL + MCM2<br />
**[[5ja4]], [[5bnv]] – hH3.3 + H4 + TONSL + MCM2<br />
**[[7cj0]] – hH3.3 + H4 + HDJC9 + MCM2<br />
**[[5bo0]], [[5bnx]] – hH3.2 + H4 + ASF1B + MCM2<br />
**[[5bo0]], [[5bnx]] – hH3.2 + H4 + ASF1B + MCM2<br />
**[[7vcq]] – hH3.3 + H4 + ASF1B + BKRF4<br />
**[[6mlc]] - hH4 + histone-lysine methyltransferase <br />
**[[6mlc]] - hH4 + histone-lysine methyltransferase <br />
**[[6qxz]] – hH3.3 + histone-lysine methyltransferase - NMR<br />
**[[6qxz]] – hH3.3 + histone-lysine methyltransferase - NMR<br />
**[[6vil]] – hH3.1 + BAHCC1<br />
**[[7ciz]] – hH3.3 + H4 + MCM2<br />
**[[3iid]], [[3iif]] – hH2A macro domain + ADP-ribose<br />
**[[3qzs]], [[3qzt]]– XlH4 + nucleosome-remodeling factor subunit BPTF <br />
**[[6o7g]] - XlH4 + histone-lysine methyltransferase – NMR<br />
**[[6o7g]] - XlH4 + histone-lysine methyltransferase – NMR<br />
**[[3qzs]], [[3qzt]] – XlH4 + nucleosome-remodeling factor subunit BPTF – ''Xenopus laevis''<BR />
**[[4h9n]], [[4h9o]], [[4h9p]], [[4h9q]], [[4h9r]], [[4h9s]], [[4hga]] - XlH3.3 (mutant) + H4 + death domain-associated protein <br />
**[[4h9n]], [[4h9o]], [[4h9p]], [[4h9q]], [[4h9r]], [[4h9s]], [[4hga]] - XlH3.3 (mutant) + H4 + death domain-associated protein 6<br />
**[[5kdm]] - XlH3.3 + H4 + death domain-associated protein + tegument protein<br />
**[[5kdm]] - XlH3.3 + H4 + death domain-associated protein + tegument protein<br />
**[[2io5]] - XlH3.1 + H4 + anti-silencing protein<BR />
**[[2io5]] - XlH3.1 + H4 + anti-silencing protein<br />
**[[5g2e]] - XlH2A + H2B + NAP1<br />
**[[5g2e]], [[6k00]] - XlH2A + H2B + NAP1<br />
**[[6n1z]] - XlH2A + H2B + importin<br />
**[[6n1z]] - XlH2A + H2B + importin<br />
**[[5bsa]], [[5bs7]] – XlH3.2 + H4 + SPT2<br />
**[[5bsa]], [[5bs7]] – XlH3.2 + H4 + SPT2<br />
**[[4eo5]] - XlH3.2 (mutant) + H4 (mutant) + histone chaperone ASF1<br />
**[[6o22]] - XlH3.2 + H4 + RTT109 + ASF1<br />
**[[7unk]] - XlH3 + H4 + importin-4 + ASF1<br />
**[[4eo5]] - XlH3.2 (mutant) + H4 (mutant) + ASF1<br />
**[[4ld9]] - XlH3.2 + H4 + H2A + H2B + widom sequence reverse + SIR3<br />
**[[4ld9]] - XlH3.2 + H4 + H2A + H2B + widom sequence reverse + SIR3<br />
**[[2l5a]] - yH4/H3-like centromeric protein/SCM3<BR />  
**[[6k09]], [[6k0c]] - CeH2A + H2B + NAP1<br />
**[[2jss]] - yH2A/H2B + CHZ1 – NMR<BR />
**[[6m2m]] – AtH2A + H2B + OSCHZ1 – ''Arabidopsis thaliana''<br />
**[[7c7x]] – AtH2A + H2B + NAP1 <br />
**[[2l5a]] - yH4/H3-like centromeric protein/SCM3 <br />
**[[2jss]] - yH2A/H2B + CHZ1 – NMR<br />
**[[4wnn]] – yH32A + H2B + SPT2<br />
**[[4wnn]] – yH32A + H2B + SPT2<br />
**[[2hue]] - yH3 + H4 + anti-silencing protein<BR />
**[[2hue]] - yH3 + H4 + anti-silencing protein<br />
**[[2xql]], [[3c9k]] - cH3.2 + H4 + H2A + H2B – EM<br />
**[[7xay]] - yH3 + H4 + cytochrome b562 + ASF1<br />
**[[4uuz]] – DmH3 + H4 + DNA replication licensing factor – ''Drosophila melanogaster''<br />
**[[4uuz]] – DmH3 + H4 + DNA replication licensing factor <br />
**[[2yfv]], [[2yfw]] - H4 + H3-like centromeric protein + SCM3 –  ''Kluyveromyces lactis''<BR />
**[[2yfv]], [[2yfw]] - KlH4 + H3-like centromeric protein + SCM3 –  ''Kluyveromyces lactis''<br />
**[[6uph]] - Kl H3-like centromeric protein + H4 + H2A + H2B in nucleosome – Cryo EM<br />
**[[1pfb]] – H3 + polycomb protein – ''Strongylocentrus purpuratus''<br />


*Human nucleosome core + DNA
*Human nucleosome core + DNA


**[[3an2]], [[4x23]] – hH4 + H2A + H2B + H3-like centromeric protein + DNA<BR />
**[[3av1]], [[2av2]], [[3av2]], [[3waa]], [[3wa9]], [[3w99]], [[3w98]], [[3w97]], [[3w96]], [[5x7x]], [[3a6n]], [[3afa]], [[2cv5]], [[5jrg]], [[5gxq]], [[5gt3]], [[5gt0]], [[5gsu]], [[5gse]], [[5cpk]], [[5cpj]], [[5cpi]], [[5b33]], [[5b32]], [[5b31]], [[5b2j]], [[5b2i]], [[5b24]], [[5b0z]], [[5b0y]], [[5ay8]], [[5avc]], [[5avb]], [[5av9]], [[5av8]], [[5av6]], [[5av5]], [[5z5t]], [[4ym6]], [[4ym5]], [[5y0c]], [[5onw]], [[5ong]], [[5omx]], [[6hkt]], [[6jou]], [[6jr0]], [[6jr1]], [[6k1i]], [[6k1j]], [[6j1k]], [[6ke9]], [[6l9h]], [[6le9]], [[6ipu]], [[6iq4]], [[6jxd]], [[6kvd]], [[6ler]], [[6m3v]], [[6m44]], [[6v2k]] – hH3.1 + H4 + H2A + H2B in nucleosome<br />
**[[3av1]], [[2av2]], [[3av2]], [[3waa]], [[3wa9]], [[3w99]], [[3w98]], [[3w97]], [[3w96]], [[5x7x]], [[3a6n]], [[3afa]], [[2cv5]], [[5jrg]], [[5gxq]], [[5gt3]], [[5gt0]], [[5gsu]], [[5gse]], [[5cpk]], [[5cpj]], [[5cpi]], [[5b33]], [[5b32]], [[5b31]], [[5b2j]], [[5b2i]], [[5b24]], [[5b0z]], [[5b0y]], [[5ay8]], [[5avc]], [[5avb]], [[5av9]], [[5av8]], [[5av6]], [[5av5]], [[5z5t]], [[4ym6]], [[4ym5]], [[5y0c]], [[5onw]], [[5ong]], [[5omx]] – hH3.2 + H4 + H2A + H2B + DNA<BR />
**[[6r0c]], [[6t79]], [[6r94]], [[6r93]], [[6l4a]], [[6t93]], [[7nl0]] – hH3 + H4 + H2A + H2B in nucleosome – Cryo EM<br />
**[[5x0y]], [[5x0x]] – hH3 + H4 + H2A + H2B + DNA + SNF2<br />
**[[6l49]], [[6l9z]], [[6m4d]], [[6m4g]], [[6m4h]], [[6r25]], [[7u51]], [[7u52]], [[7u53]], [[7v90]], [[7v9c]], [[7v9j]], [[7v9k]], [[7v9s]], [[7va4]], [[7v96]], [[7xd1]], [[7xzy]], [[7y00]], [[8aag]] - hH3.1 + H4 + H2A + H2B in nucleosome – Cryo EM<br />
**[[5z30]] – hH3.1 + H4 + H2A (mutant) + H2B + DNA <br />
**[[5z30]] – hH3.1 + H4 + H2A (mutant) + H2B in nucleosome<br />
**[[5y0d]] – hH3.1 + H4 + H2A + H2B (mutant) + DNA <br />
**[[5y0d]] – hH3.1 + H4 + H2A + H2B (mutant) in nucleosome<br />
**[[4qlc]] – hH3 + H4 + H2A + H2B + H5 + DNA <br />
**[[4qlc]] – hH3 + H4 + H2A + H2B + H5 in nucleosome<br />
**[[6r25]] – hH3 + H4 + H2A + H2B + NPAC + lysine-specific histone demethylase + DNA – Cryo EM<br />
**[[3ayw]], [[3aze]], [[3azf]], [[3azg]], [[3azh]], [[5b40]] - hH3 (mutant) + H4 + H2A + H2B in nucleosome<br />
**[[3ayw]], [[3aze]], [[3azf]], [[3azg]], [[3azh]] - hH3.1 (mutant) + H4 + H2A + H2B + DNA<br />
**[[3azi]], [[3azj]], [[3azk]], [[3azl]], [[3azm]], [[3azn]] - hH3.1 + H4 (mutant) + H2A + H2B in nucleosome<br />
**[[6r94]], [[6r93]] - hH3.1 + H4 + H2A + H2B + DNA – Cryo EM<br />
**[[7lya]] - hH3.1 + H4 + H2B in nucleosome – Cryo EM<br />
**[[6r92]], [[6r91]], [[6r90]], [[6r8z]], [[6r8y]] - hH3.1 + H4 + H2A + H2B + DNA damage-binding protein + DNA – Cryo EM<br />
**[[6pwx]] - hH3.2 + H4 + H2A + H2B in nucleosome – Cryo EM<br />
**[[3azi]], [[3azj]], [[3azk]], [[3azl]], [[3azm]], [[3azn]], [[5b40]] - hH3.1 + H4 (mutant) + H2A + H2B + DNA<br />
**[[7pet]], [[7peu]], [[7pev]], [[7pew]], [[7pex]], [[7pey]], [[7pez]], [[7pf0]], [[7pf2]], [[7pf3]], [[7pf4]], [[7pf5]], [[7pf6]], [[7pfa]], [[7pfc]], [[7pfd]], [[7pfe]], [[7pff]], [[7pft]], [[7pfu]], [[7pfv]], [[7pfw]], [[7pfx]] - hH3.2 + H4 + H2A + H2B + H1.4 in nucleosome – Cryo EM<br />
**[[5e5a]] - hH3.2 + H4 + H2A + H2B + IE1 + DNA<br />
**[[7x57]], [[7x58]] - hH3.1 + H4 in nucleosome – Cryo EM<br />
**[[6hkt]] - hH3 + H2A + H2B + DNA <br />
**[[5xf5]], [[5xf4]], [[5xf3]] - hH3.1 + H4 + H2A + H2B in nucleosome + Ru derivative<br />
**[[5xf5]], [[5xf4]], [[5xf3]] - hH3.1 + H4 + H2A + H2B + Ru derivative + DNA<br />
 
* Human nucleosome core + DNA complex with protein
 
**[[5x0y]], [[5x0x]] – hH3 + H4 + H2A + H2B in nucleosome + SNF2<br />
**[[3an2]], [[4x23]] – hH4 + H2A + H2B in nucleosome + H3-like centromeric protein <br />
**[[7uv9]] – hH3.2 (mutant) + H4 + H2A + H2B in nucleosome + lysine-specific histone demethylase – Cryo EM<br />
**[[6r25]] – hH3 + H4 + H2A + H2B in nucleosome + NPAC + lysine-specific histone demethylase – Cryo EM<br />
**[[6r92]], [[6r91]], [[6r90]], [[6r8z]], [[6r8y]] - hH3.1 + H4 + H2A + H2B in nucleosome + DNA damage-binding protein – Cryo EM<br />
**[[5e5a]] - hH3.2 + H4 + H2A + H2B in nucleosome + IE1<br />
**[[7e8i]], [[7lyb]], [[8grq]] - hH3.1 + H4 + H2B in nucleosome + BRCA1 + BARD1 + UbCH5C – Cryo EM<br />
**[[8grm]] - hH3.1 + H4 + H2B in nucleosome + Commd3 + Ring1B + UbCH5B – Cryo EM<br />
**[[7jzv]] - hH3.2 (mutant) + H4 + H2A + H2B in nucleosome + BRAC1 – Cryo EM<br />
**[[6uxw]] - hH3.3 + H4 + H2A + H2B in nucleosome + SWI/SNF complex – Cryo EM<br />
**[[7ea8]] - hH3.3 + H4 + H2A + H2B in nucleosome + SETD2 – Cryo EM<br />
**[[7d1z]] - hH3.1 + H4 + H2A + H2B in nucleosome + SET8 – Cryo EM<br />
**[[7d20]] - hH4 + H2A + H2B in nucleosome + SET8 + Cenp-A – Cryo EM<br />
**[[7r5r]] - hH4 + H2A + H2B in nucleosome + CenP-A + CenP-C – Cryo EM<br />
**[[7y7i]] - hH4 + H2A + H2B in nucleosome + CenP-A + KNL2 – Cryo EM<br />
**[[6muo]], [[6mup]], [[7bxt]], [[7by0]] - hH4 + H2A + H2B in nucleosome + CenP-A + CenP-C + CenP-N – Cryo EM<br />
**[[7pii]] - hH4 + H2A + H2B in nucleosome + CenP-C – Cryo EM<br />
**[[7u46]], [[7u47]] - hH4 + H2A + H2B in nucleosome + CenP-A + Cenp-N – Cryo EM<br />
**[[7ywx]], [[7yyh]] - hH4 + H2A + H2B in nucleosome + CenP-A,C,H-Q,R,U  – Cryo EM<br />
**[[7xd0]] - hH4 + H2A + H2B in nucleosome + L40 + histone domain-containing protein – Cryo EM<br />
**[[6x59]], [[6x5a]], [[6xjd]], [[6y5d]], [[6y5e]], [[7a08]], [[7jo9]], [[7joa]] - hH3.3 + H4 + H2A + H2B in nucleosome + cGAS – Cryo EM<br />
**[[7c0m]], [[7ccq]], [[7ccr]] - hH3.1 + H4 + H2A + H2B in nucleosome + cGAS – Cryo EM<br />
**[[7bwd]] - hH3.1 + H4 + H2A + H2B in nucleosome + DOT1 + ubiquitin  – Cryo EM<br />
**[[7xcr]], [[7xct]] - hH4 + H2A + H2B in nucleosome + DOT1L + ubiquitin  – Cryo EM<br />
**[[7lyc]] - hH3.1 + H4 + H2A + H2B in nucleosome + BARD1 + ubiquitin  – Cryo EM<br />
**[[7scy]], [[7scz]] - hH3.1 + H4 + H2A + H2B in nucleosome + PARP1  – Cryo EM<br />
**[[7e8d]] - hH3.1 + H4 + H2A + H2B in nucleosome + NSD2 – Cryo EM<br />
**[[6usj]] - hH3.1 + H4 + H2A + H2B in nucleosome + PARP2  – Cryo EM<br />
**[[6t7a]], [[6t7b]], [[6t7c]], [[6t7d]] - hH3.2 + H4 + H2A + H2B in nucleosome + SOX – Cryo EM<br />
**[[6t90]], [[6yov]] - hH3.2 + H4 + H2A + H2B in nucleosome + SOX + OCT4 – Cryo EM<br />
**[[6rny]] - hH3.3 + H4 + H2A + H2B in nucleosome + integrase – Cryo EM<br />
**[[6upk]], [[6upl]] - hH3.1 + H4 + H2A + H2B in nucleosome + FACT complex – Cryo EM<br />
**[[6v92]] – hH3.1 + H4 + H2A + H2B in nucleosome + RSC complex – Cryo EM<br />
**[[8g57]] – hH3 + H4 + H2A + H2B in nucleosome + sirtuin 6 deacylase – Cryo EM<br />
**[[7u50]] – hH3 + H4 + H2A + H2B in nucleosome + APE1 – Cryo EM<br />
**[[7xzx]], [[7xzz]] – hH3 + H4 + H2A + H2B in nucleosome + p53 – Cryo EM<br />
**[[7zi4]], [[8av6]] – hH3.2 + H4 + H2A + H2B in nucleosome INO80 complex – Cryo EM<br />
**[[8atf]] – hH3.2 + H4 + H2A + H2B in nucleosome + INO80 + PAPA-1 domain-containing protein – Cryo EM<br />
**[[7yqk]] – hH3.1 + H4 + H2A + H2B in nucleosome + polyubiquitin + 53bp1 + TP53-binding protein – Cryo EM<br />
**[[7w9v]] – hH3.1 + H4 + H2A + H2B in nucleosome + p300 – Cryo EM<br />
**[[7tan]] – hH3.2 + H4 + H2A + H2B in nucleosome + VRK1 – Cryo EM<br />
**[[7y8r]] - hH3 + H4 + H2A + H2B in nucleosome PBAF complex - Cryo EM<br />
**[[6fml]] – hH3.2 + H4 + H2A + H2B in nucleosome + RuvB + actin-related protein + IES6 - Cryo EM<br />


*Xenopus nucleosome core + DNA
*Xenopus nucleosome core + DNA


**[[6r1t]] - XlH3 + H2A + H2B + DNA – Cryo EM<br />
**[[6r1t]], [[6px1]] - XlH3 + H2A + H2B in nucleosome – Cryo EM<br />
**[[3mnn]], [[3o62]], [[3lz0]], [[3lz1]], [[3lel]], [[3kuy]], [[3c1b]], [[3c1c]], [[2nzd]], [[2fj7]], [[1zbb]], [[1s32]], [[1p34]], [[1p3a]], [[1p3b]], [[1p3f]], [[1p3g]], [[1p3i]], [[1p3k]], [[1p3l]], [[1p3m]], [[1p3o]], [[1p3p]], [[1m18]], [[1m19]], [[1m1a]], [[1kx3]], [[1kx4]], [[1kx5]], [[1aoi]], [[3reh]], [[3rei]], [[3rej]], [[3rek]], [[3rel]], [[3ut9]], [[3uta]], [[3utb]], [[5f99]], [[5dnn]], [[5dnm]], [[5cp6]], [[4z66]], [[4ys3]], [[4xzq]], [[5oy7]], [[5oxv]] - XlH3.2 + H4 + H2A + H2B + DNA<BR />
**[[3mnn]], [[3o62]], [[3lz0]], [[3lz1]], [[3lel]], [[3kuy]], [[3c1b]], [[3c1c]], [[2nzd]], [[2fj7]], [[1zbb]], [[1s32]], [[1p34]], [[1p3a]], [[1p3b]], [[1p3f]], [[1p3g]], [[1p3i]], [[1p3k]], [[1p3l]], [[1p3m]] [[1p3o]], [[1p3p]], [[1m18]], [[1m19]], [[1m1a]], [[1kx3]], [[1kx4]], [[1kx5]], [[1aoi]], [[3reh]], [[3rei]], [[3rej]], [[3rek]], [[3rel]], [[3ut9]], [[3uta]], [[3utb]], [[5f99]], [[5dnn]], [[5dnm]], [[5cp6]], [[4z66]], [[4ys3]], [[4xzq]], [[5oy7]], [[5oxv]] - XlH3.2 + H4 + H2A + H2B in nucleosome<br />
**[[6fq8]], [[6fq6]], [[6fq5]], [[6esi]], [[6esh]], [[6esg]], [[6esf]] - XlH3.2 + H4 + H2A + H2B + DNA – Cryo EM<br />
**[[6wz5]], [[6wz9]], [[7kbd]], [[7kbe]], [[7m1x]], [[7ohc]], [[7xfc]], [[7xfi]], [[7xfl]], [[7xfn]], [[7xnp]] - XlH3.2 + H4 + H2A + H2B in nucleosome  - Cryo EM<br />
**[[5nl0]] - XlH3.2 + H4 + H2A + H2B + H1.0 + DNA<br />
**[[7kbf]] - XlH3.2 + H4 + H2A + H2B + H1.8 in nucleosome  - Cryo EM<br />
**[[6om3]] - XlH3.2 + H4 + H2A + H2B + origin recognition complex + DNA<br />
**[[7swy]] - XlH3 (mutant) + H4 + H2A + H2B (mutant) n nucleosome  - Cryo EM<br />
**[[6jm9]] - XlH3.2 + H4 + H2A + H2B + histone-lysine methyltransferase + DNA – Cryo EM<br />
**[[7ktq]] - XlH3 + H4 + H2A + H2B in nucleosome – Cryo EM<br />
**[[6o96]], [[6nqa]], [[6nog]], [[6nn6]], [[6nj9]], [[6jma]], [[6j99]] - XlH3.2 + H4 + H2A + H2B + histone-lysine methyltransferase + ubiquitin + DNA – Cryo EM<br />
**[[6esi]], [[6esh]], [[6esg]], [[6esf]], [[6fq8]], [[6fq6]], [[6fq5]], [[6nn6]], [[6nog]], [[6nzo]], [[6px3]], [[6r1u]], [[6ugm]] - XlH3.2 + H4 + H2A + H2B in nucleosome – Cryo EM<br />
**[[6iy3]], [[6iy2]] - XlH3.2 + H4 + H2A + H2B + SNF2H + ADP + DNA – Cryo EM<br />
**[[4xuj]] - XlH3.2 + H4 + H2A + H2B in nucleosome + Ru derivative<br />
**[[5o9g]] - XlH3.2 + H4 + H2A + H2B + CHD1 + DNA – Cryo EM<br />
**[[4xu9]] - XlH3.2 (mutant) + H4 + H2A + H2B in nucleosome + Pt derivative<br />
**[[6ftx]] - XlH3.1 + H4 + H2A + H2B + CHD1 + ubiquitin + DNA – Cryo EM<br />
**[[4xu8]] - XlH3.2 + H4 + H2A + H2B (mutant) in nucleosome + Pt derivative<br />
**[[6hts]] - XlH3.1 + H4 + H2A + H2B + RuvB + CHD1 + actin-related protein + DNA – Cryo EM<br />
**[[2f8n]] - XlH3.1 + H4 + H2A + H2B + H3 + H2A macro domain in nucleosome<br />
**[[6ne3]] - XlH3.2 (mutant) + H4 + H2A (mutant) + H2B + SNF2H + DNA – Cryo EM<br />
**[[1zla]] – XlH3 + H4 + H2A + H2B + H3 in nucleosome + antigen
**[[5mlu]] - XlH3.2 + H4 + H2A + H2B + PFV GAG peptide + DNA<br />
**[[3mgp]], [[3mgq]], [[3mgr]], [[3mgs]], [[3lja]] [[3b6f]], [[3b6g]], [[4j8u]], [[4j8v]], [[4j8w]], [[4j8x]], [[4kgc]], [[5xf6]] - XlH3.2 + H4 + H2A + H2B in nucleosome + metal<br />
**[[5kgf]] - XlH3.2 + H4 + H2A + H2B + 53BP1 + ubiquitin + DNA<br />
**[[3kxb]] - XlH3.2 (mutant) + H4 + H2A + H2B (mutant) in nucleosome <br />
**[[5hq2]] - XlH3.2 + H4 + H2A + H2B + SRM1 + SetD8 + DNA<br />
**[[3kwq]] - XlH3.2 (mutant) + H4 + H2A + H2B in nucleosome<br />
**[[4zux]] - XlH3.2 + H4 + H2A + H2B + Saga-associated factors + polyubiquitin + UBP8 + DNA<br />
 
**[[4xuj]] - XlH3.2 + H4 + H2A + H2B + Ru derivative + DNA<br />
*Xenopus nucleosome core + DNA complex with protein
**[[4xu9]] - XlH3.2 (mutant) + H4 + H2A + H2B + Pt derivative + DNA<br />
 
**[[4xu8]] - XlH3.2 + H4 + H2A + H2B (mutant) + Pt derivative + DNA<br />
**[[6pwx]] - XlH3.2 + H4 + H2A + H2B in nucleosome + RBBP5 - Cryo EM<br />
**[[2f8n]] - XlH3.1 + H4 + H2A + H2B + H3 + H2A macro domain + DNA<BR />
**[[6pww]] - XlH3.2 + H4 + H2A + H2B in nucleosome + RBBP5 + WDR5 - Cryo EM<br />
**[[1zla]] – XlH3 + H4 + H2A + H2B + H3 + antigen + DNA<BR />
**[[7mbm]], [[7mbn]] - XlH3 + H4 + H2A + H2B in nucleosome + RBBP5 + WDR5 + ALL-1 + ASH2-like protein - Cryo EM<br />
**[[3mgp]], [[3mgq]], [[3mgr]], [[3mgs]], [[3lja]], [[3b6f]], [[3b6g]], [[4j8u]], [[4j8v]], [[4j8w]], [[4j8x]], [[4kgc]], [[5xf6]] - XlH3.2 + H4 + H2A + H2B + metal ion + DNA<BR />
**[[7ud5]] - XlH3 + H4 + H2A + H2B (mutant) in nucleosome + RBBP5 + WDR5 + cDNA + ASH2-like protein + DPY-30 + polyUb- Cryo EM<br />
**[[3kxb]] - XlH3.2 (mutant) + H4 + H2A + H2B (mutant) + DNA<BR />
**[[8du4]] - XlH3 + H4 + H2A + H2B (mutant) in nucleosome + RBBP5 + WDR5 + polyUb- Cryo EM<br />
**[[3kwq]] - XlH3.2 (mutant) + H4 + H2A + H2B + DNA<BR />
**[[7vdt]] - XlH3 + H4 + H2A + H2B in nucleosome + BRG1 - Cryo EM<br />
**[[3mvd]] - XlH3.2 + H4 + H2A + H2B + regulator of chromosome condensation + DNA<BR />
**[[7vdv]] - XlH3 + H4 + H2A + H2B in nucleosome PBAF complex - Cryo EM<br />
**[[3tu4]] - XlH3.2 + H4 + H2A + H2B + regulatory protein SIR3 + DNA<br />
**[[6om3]] - XlH3.2 + H4 + H2A + H2B in nucleosome + origin recognition complex <br />
**[[4r8p]] - XlH3.2 + H4 + H2A + H2B + polycomb complex protein + ring finger protein + DNA<br />
**[[6vyp]] - XlH3 (mutant) + H4 + H2A (mutant) + H2B (mutant) in nucleosome + LSD1 + COREST<br />
**[[6r1u]] – XlH3.2 + H4 + H2A + H2B + lysine-specific histone demethylase + DNA – Cryo EM<br />
**[[7otq]], [[7tn2]] - XlH3.2 + H4 + H2A + H2B in nucleosome + CHD1 – Cryo EM<br />
**[[6k1p]], [[6jyl]], [[6iro]] – XlH3 + H4 + H2A + H2B + ISWI + ADP + DNA – Cryo EM<br />
**[[7cro]] - XlH3 + H4 + H2A + H2B in nucleosome + NSD2 – Cryo EM<br />
**[[6g0l]] – XlH3 + H4 + H2A + H2B + CHD1 + DNA – Cryo EM<br />
**[[8f86]] – XlH3 + H4 + H2A + H2B in nucleosome + sirtuin 6 deacylase – Cryo EM<br />
**[[6ryr]], [[6ryu]] - XlH3.2 + H4 + H2A + H2B in nucleosome + CHD4 – Cryo EM<br />
**[[7crp]], [[7crr]] - XlH3 + H4 + H2A + H2B in nucleosome + NSD3 – Cryo EM<br />
**[[7crq]] - XlH3.2 + H4 + H2A + H2B in nucleosome + NSD3 – Cryo EM<br />
**[[7at8]] - XlH3 + H4 + H2A + H2B in nucleosome + EZH2 + SUZ12 – Cryo EM<br />
**[[6vz4]] - XlH3 + H4 + H2A + H2B in nucleosome + STH1 + ARP7 + ARP9 + RTT – Cryo EM<br />
**[[6kiu]], [[6kiv]], [[6kiw]], [[6kix]], [[6kiz]], [[6pwv]], [[6w5i]], [[6w5m]], [[6w5n]] - XlH3.2 + H4 + H2A + H2B in nucleosome + MLL1 core complex – Cryo EM<br />
**[[7ohb]] - XlH3.2 + H4 + H2A + H2B in nucleosome + TBP – Cryo EM<br />
**[[7oh9]], [[7oha]] - XlH3.2 + H4 + H2A + H2B in nucleosome + TBP + TFIIA – Cryo EM<br />
**[[7ea5]] - XlH3 (mutant) + H4 + H2A + H2B in nucleosome + SET2 – Cryo EM<br />
**[[6s01]], [[8pc5]], [[8peo]], [[8pep]] - XlH3.2 + H4 + H2A + H2B in nucleosome + PC4 and SFRS1-interacting protein – Cryo EM<br />
**[[6iy3]], [[6iy2]] - XlH3.2 + H4 + H2A + H2B in nucleosome + SNF2H – Cryo EM<br />
**[[7eg6]] - XlH3.2 + H4 + H2A + H2B in nucleosome + SNF5 – Cryo EM<br />
**[[7egp]] - XlH3.2 + H4 + H2A + H2B in nucleosome + SWI/SNF – Cryo EM<br />
**[[6ltj]] - XlH3.3 + H4 + H2A + H2B in nucleosome + BAF complex – Cryo EM<br />
**[[5o9g]] - XlH3.2 + H4 + H2A + H2B in nucleosome + CHD1 – Cryo EM<br />
**[[6x0n]] - XlH3.2 + H4 + H2A + H2B in nucleosome + PARP2  + HPF1 – Cryo EM<br />
**[[7nkx]] – XlH3 + H4 + H2A + H2B in nucleosome + CHD1 + RNA polymerase – Cryo EM<br />
**[[7nky]] – XlH3 + H4 + H2A + H2B in nucleosome + SPT + FACT + RNA polymerase – Cryo EM<br />
**[[6jm9]] - XlH3.2 + H4 + H2A + H2B in nucleosome + DOT1  – Cryo EM<br />
**[[6jma]] - XlH3.2 + H4 + H2A + H2B in nucleosome + DOT1 + ubiquitin  – Cryo EM<br />
**[[7k6p]] - XlH3.2 (mutant) + H4 + H2A + H2B (mutant) in nucleosome + DOT1 + ubiquitin – Cryo EM<br />
**[[6nj9]] - XlH3.2 (mutant) + H4 + H2A (mutant) + H2B in nucleosome + DOT1 + ubiquitin  – Cryo EM<br />
**[[6j99]] - XlH3.2 + H4 + H2A + H2B (mutant) in nucleosome + DOT1 + ubiquitin  – Cryo EM<br />
**[[6nqa]] - XlH3.2 + H4 + H2A (mutant) + H2B (mutant) in nucleosome + DOT1 + ubiquitin  – Cryo EM<br />
**[[6o96]] - XlH3.2 (mutant) + H4 + H2A (mutant) + H2B (mutant) in nucleosome + DOT1 + ubiquitin  – Cryo EM<br />
**[[7k6q]] - XlH3.2 (mutant) + H4 (mutant) + H2A (mutant) + H2B (mutant) in nucleosome + DOT1 + ubiquitin  – Cryo EM<br />
**[[6ftx]] - XlH3.1 + H4 + H2A + H2B in nucleosome + CHD1 + ubiquitin – Cryo EM<br />
**[[6hts]] - XlH3.1 + H4 + H2A + H2B in nucleosome + RuvB + CHD1 + actin-related protein – Cryo EM<br />
**[[6ne3]] - XlH3.2 (mutant) + H4 + H2A (mutant) + H2B in nucleosome + SNF2H – Cryo EM<br />
**[[5mlu]] - XlH3.2 + H4 + H2A + H2B in nucleosome + PFV GAG peptide<br />
**[[5kgf]] - XlH3.2 + H4 + H2A + H2B in nucleosome + 53BP1 + ubiquitin<br />
**[[5hq2]] - XlH3.2 + H4 + H2A + H2B in nucleosome + SRM1 + SetD8<br />
**[[6ven]] - XlH3.2 (mutant) + H4 + H2A (mutant) + H2B (mutant) in nucleosome + COMPASS + ubiquitin – Cryo EM<br />
**[[6uh5]] - XlH3.2 + H4 + H2A + H2B (mutant) in nucleosome + COMPASS + ubiquitin – Cryo EM<br />
**[[6z6p]] - XlH3.2 + H3 + H4 + H2A + H2B in nucleosome + HDA1 – Cryo EM<br />
**[[6pa7]] - XlH3.2 + H4 + H2A + H2B in nucleosome + DNMT3  – Cryo EM<br />
**[[6wkr]] - XlH3.2 + H3 + H4 + H2A + H2B in nucleosome + PRC2 + JARID2 – Cryo EM<br />
**[[6lth]] - XlH3.2 + H3 + H4 + H2A + H2B in nucleosome + BAF complex – Cryo EM<br />
**[[6zhx]], [[6zhy]], [[7enn]] - XlH3.2 + H3 + H4 + H2A + H2B in nucleosome + ALC1 – Cryo EM<br />
**[[6tem]] - XlH4 + H2A + H2B in nucleosome + CenP-A – Cryo EM<br />
**[[7u4d]] - XlH4 + H2A + H2B in nucleosome + CenP-A + Cenp-N – Cryo EM<br />
**[[4zux]] – XlH3.2 + H4 + H2A + H2B in nucleosome + Saga-associated factors + polyubiquitin + UBP8<br />
**[[3mvd]] - XlH3.2 + H4 + H2A + H2B in nucleosome + regulator of chromosome condensation<br />
**[[3tu4]] - XlH3.2 + H4 + H2A + H2B in nucleosome + regulatory protein SIR3<br />
**[[4r8p]] - XlH3.2 + H4 + H2A + H2B in nucleosome + polycomb complex protein + ring finger protein<br />
**[[6k1p]], [[6jyl]], [[6iro]] – XlH3 + H4 + H2A + H2B in nucleosome + ISWI – Cryo EM<br />
**[[6kw3]], [[6kw4]], [[6kw5]], [[6tda]] – XlH3 + H4 + H2A + H2B in nucleosome + RSC complex – Cryo EM<br />
**[[6rny]] - hH3.3 + H4 + H2A + H2B in nucleosome + integrase – Cryo EM<br />
**[[6t9l]] – XlH3 + H4 + H2A + H2B in nucleosome + SAGA complex – Cryo EM<br />
**[[8g86]], [[8g88]], [[8g8b]] - XlH3 + H4 + H2A + H2B in nucleosome + OCT4 – Cryo EM<br />
**[[7vvu]] - XlH3 + H4 + H2A + H2B in nucleosome + EAF6 +YNG2 + ESA1 – Cryo EM<br />
**[[7vvz]] - XlH3 + H4 + H2A + H2B in nucleosome + EAF6 +YNG2 + ESA1 + NUA4 – Cryo EM<br />
**[[7xfh]], [[7xfm]] - XlH3.2 + H4 + H2A + H2B in nucleosome + ADPG – Cryo EM<br />
**[[8gpn]] - XlH3.2 + H4 + H2A + H2B in nucleosome + menin – Cryo EM<br />
**[[8pc6]] - XlH3.2 + H4 + H2A + H2B in nucleosome + PC4 and SFRS1-interacting protein – Cryo EM<br />
**[[7ssa]] - XlH3.2 + H4 + H2A + H2B in nucleosome + Cbf1 – Cryo EM<br />


*Other nucleosome core + DNA
*Other nucleosome core + DNA


**[[1u35]] - mH3.1 + H2A + H2B + His2A macro domain + DNA – mouse<BR />
**[[1u35]] - mH3.1 + H2A + H2B + His2A macro domain in nucleosome – mouse<br />
**[[5xm1]], [[5xm0]] – mH3 + H4 + H2A + H2B + DNA <br />
**[[5xm1]], [[5xm0]] – mH3 + H4 + H2A + H2B in nucleosome<br />
**[[1f66]] - XlH3 + mH4 + hH2A + XlH2B + DNA<BR />
**[[7dbh]], [[7vbm]] – mH3mm18 + H4 + H2A + H2B in nucleosome – Cryo EM<br />
**[[5b1m]], [[5b1l]] - mH3 + H4 + H2A + H2B + DNA<br />
**[[1f66]] - XlH3 + mH4 + hH2A + XlH2B in nucleosome <br />
**[[2aro]], [[1tzy]], [[1hq3]], [[2hio]], [[1hio]] - cH3 + H4 + H2A + H2B<br />
**[[5b1m]], [[5b1l]] - mH3 + H4 + H2A + H2B in nucleosome<br />
**[[1eqz]] - cH3 + H4 + H2A + H2B + DNA<BR />
**[[2aro]], [[1tzy]], [[1hq3]], [[2hio]], [[1hio]] - cH3 + H4 + H2A + H2B
**[[2pyo]], [[2nqb]], [[3nqb]] - DmH3 + H4 + H2A + H2B + DNA <BR />
**[[1eqz]] - cH3 + H4 + H2A + H2B in nucleosome <br />
**[[5wcu]] - DmH3 + H4 + H2A + H2B + H5 + DNA<br />
**[[2pyo]], [[3nqb]], [[2nqb]] - DmH3 + H4 + H2A + H2B in nucleosome <br />
**[[4x23]] - DmH3 + H4 + H2A + H2B + centromeric protein C + DNA<br />
**[[6pwe]] - DmH3 + H4 + H2A + H2B in nucleosome – Cryo EM<br />
**[[6dzt]] - DmH3 + H4 + H2A + H2B + antibody + DNA<br />
**[[6pwf]] - DmH3 + H4 + H2A + H2B in nucleosome + chromatin remodeling factor – Cryo EM<br />
**[[6j51]], [[6j50]], [[6j4z]], [[6j4y]], [[6j4x]], [[6j4w]], [[6inq]], [[6i84]], [[6a5u]], [[6a5t]], [[6a5r]], [[6a5p]], [[6a5o]], [[6a5l]] – yH3.3 + H4 + H2A + H2B + RNA polymerase + RNA + DNA – Cryo EM<br />
**[[5wcu]] - DmH3 + H4 + H2A + H2B + H5 in nucleosome<br />
**[[6ir9]] – yH3.3 + H4 + H2A + H2B + RNA polymerase + SPT4 + SPT5 + RNA + DNA – Cryo EM<br />
**[[4x23]] - DmH3 + H4 + H2A + H2B in nucleosome + Cenp-C <br />
**[[6gen]], [[6gej]] – yH3 + H4 + H2A + H2B + SWI1 + actin-like protein + vacuolar protein sorting-associated + RNA + DNA – Cryo EM<br />
**[[6dzt]] - DmH3 + H4 + H2A + H2B in nucleosome + antibody <br />
**[[1id3]] - yH3 + H4 + H2A + H2B + DNA<BR />
**[[6xws]], [[6xwt]] - DmH4 + CenP-A + CAL1 <br />
**[[4jjn]], [[4kud]] - yH3 + H4 + H2A.2 + H2B.2 + SIR3 + DNA<br />
**[[6j51]], [[6j50]], [[6j4z]], [[6j4y]], [[6j4x]], [[6j4w]], [[6inq]], [[6i84]], [[6a5u]], [[6a5t]], [[6a5r]], [[6a5p]], [[6a5o]], [[6a5l]], [[7zs9]], [[7zsa]], [[7zsb]] – yH3.3 + H4 + H2A + H2B in nucleosome + RNA polymerase + RNA – Cryo EM<br />
**[[6ir9]] – yH3.3 + H4 + H2A + H2B in nucleosome + RNA polymerase + SPT4 + SPT5 + RNA – Cryo EM<br />
**[[6gen]], [[6gej]] – yH3 + H4 + H2A + H2B in nucleosome + SWI1 + actin-like protein + vacuolar protein sorting-associated + RNA – Cryo EM<br />
**[[1id3]] - yH3 + H4 + H2A + H2B in nucleosome <br />
**[[4jjn]], [[4kud]] - yH3 + H4 + H2A.2 + H2B.2 in nucleosome + SIR3 <br />
**[[5zbb]], [[5zba]] - yH3 + H4 + RTT109 + ASF1<br />
**[[5zbb]], [[5zba]] - yH3 + H4 + RTT109 + ASF1<br />
**[[5z3v]], [[5z3u]], [[5z3o]], [[5z3l]] - yH3.2 + H4 + H2A + H2B + SNF2 + ADP + DNA – Cryo EM<br />
**[[5z3v]], [[5z3u]], [[5z3o]], [[5z3l]] - yH3.2 + H4 + H2A + H2B in nucleosome + SNF2 – Cryo EM<br />
2aro, 1tzy, 1hq3, 2hio, 1hio - cH3 + H4 + H2A + H2B
**[[7k7g]] - yH3 + H4 + H2A + H2B in nucleosome + CenP-3 – Cryo EM<br />
**[[6fml]] – H3.2 + H4 + H2A + H2B + RuvB + actin-related protein + IES6 + DNA – ''Chaetomium thermophilum'' - Cryo EM<br />
**[[7z0o]] - yH3 + H4 + H2A + H2B in nucleosome + RNA polymerase transcription initiation factors – Cryo EM<br />
**[[7e9c]], [[7e9f]] - yH3 + H4 + H2A + H2B in nucleosome + origin recognition complex subunit 1 – Cryo EM<br />
**[[6qld]] - yH3 + H4 + H2A + H2B in kinetochore + CenP-A – Cryo EM<br />
**[[7on1]] - yH4 + H2A + H2B in nucleosome + CenP-A + CenP-C – Cryo EM<br />
**[[7k78]] - yH4 + H2A + H2B in nucleosome + Sce4 + ScfV – Cryo EM<br />
**[[6kxv]] - H3 + H4 + H2A + H2B in nucleosome – ''Leishmania major<''br />
**[[7d69]] - H3 + H4 + H2A + H2B in nucleosome – ''Giardia intestinalis'' – Cryo EM<br />
**[[7wlr]] - H3 + H4 + H2A + H2B in nucleosome – ''Komagataella pastoris'' – Cryo EM<br />
**[[7n8n]] - H3 + H4 + H2A + H2B in nucleosome – Melbournevirus – Cryo EM<br />
**[[7lv8]], [[7lv9]] - H3 + H4 + H2A + H2B in nucleosome – Marseillevirus – Cryo EM<br />
 
*Chromatosome core + DNA
 
**[[6la2]], [[6la8]], [[6la9]], [[6lab]], [[7cow]] - hH3.1 + H4 + H2A + H2B + H1.0 in chromatosome <br />
**[[7dbp]] - hH3.1 + H4 + H2A + H2B + H1.0 in chromatosome – Cryo EM<br />
**[[8h1t]] - hH3.1 + H4 + H2A + H2B + H1.4 + BAP1 + ASXL1 + Ub in chromatosome – Cryo EM<br />
**[[7k5x]], [[7k5y]], [[7k60]], [[7k61]], [[7k63]] - hH3.1 + H4 + H2A + H2B + H1.0 in chromatosome + scFv – Cryo EM<br />
**[[5nl0]] - XlH3.2 + H4 + H2A + H2B + H1.0 in chromatosome<br
 
}}
}}


[[Category:Topic Page]]
[[Category:Topic Page]]

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

Michal Harel, Joel L. Sussman
Retrieved from "https://proteopedia.openfox.io/w/Histone_3D_structures"