2xyp: Difference between revisions

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-[[Image:2xyp.png|left|200px]]
-{{STRUCTURE_2xyp|  PDB=2xyp  |  SCENE=  }}
+==Caspase-3:CAS26049945==
+<StructureSection load='2xyp' size='340' side='right'caption='[[2xyp]], [[Resolution|resolution]] 1.86&Aring;' scene=''>
+== Structural highlights ==
+<table><tr><td colspan='2'>[[2xyp]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2XYP OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2XYP FirstGlance]. <br>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.86&#8491;</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=XVE:PHENYLMETHYL+N-[(2S)-4-CHLORO-3-OXO-1-PHENYL-BUTAN-2-YL]CARBAMATE'>XVE</scene></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2xyp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2xyp OCA], [https://pdbe.org/2xyp PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2xyp RCSB], [https://www.ebi.ac.uk/pdbsum/2xyp PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2xyp ProSAT]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/CASP3_HUMAN CASP3_HUMAN] Involved in the activation cascade of caspases responsible for apoptosis execution. At the onset of apoptosis it proteolytically cleaves poly(ADP-ribose) polymerase (PARP) at a '216-Asp-|-Gly-217' bond. Cleaves and activates sterol regulatory element binding proteins (SREBPs) between the basic helix-loop-helix leucine zipper domain and the membrane attachment domain. Cleaves and activates caspase-6, -7 and -9. Involved in the cleavage of huntingtin. Triggers cell adhesion in sympathetic neurons through RET cleavage.<ref>PMID:7596430</ref> <ref>PMID:21357690</ref>
+<div style="background-color:#fffaf0;">
+== Publication Abstract from PubMed ==
+Using a fragment-based docking procedure, several small-molecule inhibitors of caspase-3 were identified and tested and the crystal structures of three inhibitor complexes were determined. The crystal structures revealed that one inhibitor (NSC 18508) occupies only the S1 subsite, while two other inhibitors (NSC 89167 and NSC 251810) bind only to the prime part of the substrate-binding site. One of the major conformational changes observed in all three caspase-3-inhibitor complexes is a rotation of the Tyr204 side chain, which blocks the S2 subsite. In addition, the structural variability of the residues shaping the S1-S4 as well as the S1' subsites supports an induced-fit mechanism for the binding of the inhibitors in the active site. The high-resolution crystal structures reported here provide novel insights into the architecture of the substrate-binding site, which might be useful for the design of more potent caspase inhibitors.
-===CASPASE-3:CAS26049945===
+In silico identification and crystal structure validation of caspase-3 inhibitors without a P1 aspartic acid moiety.,Ganesan R, Jelakovic S, Mittl PR, Caflisch A, Grutter MG Acta Crystallogr Sect F Struct Biol Cryst Commun. 2011 Aug 1;67(Pt, 8):842-50. Epub 2011 Jul 13. PMID:21821879<ref>PMID:21821879</ref>
-{{ABSTRACT_PUBMED_21821879}}
+From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
+</div>
-==About this Structure==
+<div class="pdbe-citations 2xyp" style="background-color:#fffaf0;"></div>
-[[2xyp]] is a 2 chain structure of [[Caspase]] with sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2XYP OCA].
 ==See Also==
-*[[Caspase|Caspase]]
+*[[Caspase 3D structures|Caspase 3D structures]]
+== References ==
-==Reference==
+<references/>
-<ref group="xtra">PMID:021821879</ref><references group="xtra"/>
+__TOC__
-[[Category: Caspase-3]]
+</StructureSection>
 [[Category: Homo sapiens]]
-[[Category: Ganesan, R.]]
+[[Category: Large Structures]]
-[[Category: Grutter, M G.]]
+[[Category: Ganesan R]]
-[[Category: Jelakovic, S.]]
+[[Category: Grutter MG]]
-[[Category: Mittl, P R.]]
+[[Category: Jelakovic S]]
-[[Category: Apoptosis]]
+[[Category: Mittl PR]]
-[[Category: Docking]]
-[[Category: Hydrolase]]
-[[Category: In silico screening]]