2xut: Difference between revisions
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<StructureSection load='2xut' size='340' side='right' caption='[[2xut]], [[Resolution|resolution]] 3.62Å' scene=''> | ==Crystal structure of a proton dependent oligopeptide (POT) family transporter.== | ||
<StructureSection load='2xut' size='340' side='right'caption='[[2xut]], [[Resolution|resolution]] 3.62Å' scene=''> | |||
== Structural highlights == | == Structural highlights == | ||
<table><tr><td colspan='2'>[[2xut]] is a 3 chain structure with sequence from [ | <table><tr><td colspan='2'>[[2xut]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Shewanella_oneidensis_MR-1 Shewanella oneidensis MR-1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2XUT OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2XUT FirstGlance]. <br> | ||
</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.62Å</td></tr> | ||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2xut FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2xut OCA], [https://pdbe.org/2xut PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2xut RCSB], [https://www.ebi.ac.uk/pdbsum/2xut PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2xut ProSAT]</span></td></tr> | |||
</table> | </table> | ||
== Function == | |||
[https://www.uniprot.org/uniprot/Q8EKT7_SHEON Q8EKT7_SHEON] | |||
<div style="background-color:#fffaf0;"> | <div style="background-color:#fffaf0;"> | ||
== Publication Abstract from PubMed == | == Publication Abstract from PubMed == | ||
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From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
</div> | </div> | ||
<div class="pdbe-citations 2xut" style="background-color:#fffaf0;"></div> | |||
==See Also== | |||
*[[Symporter 3D structures|Symporter 3D structures]] | |||
== References == | == References == | ||
<references/> | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
[[Category: Shewanella oneidensis]] | [[Category: Large Structures]] | ||
[[Category: Baldwin | [[Category: Shewanella oneidensis MR-1]] | ||
[[Category: Cameron | [[Category: Baldwin SA]] | ||
[[Category: Carpenter | [[Category: Cameron AD]] | ||
[[Category: Drew | [[Category: Carpenter EP]] | ||
[[Category: Fowler | [[Category: Drew D]] | ||
[[Category: Ingram | [[Category: Fowler PW]] | ||
[[Category: Iwata | [[Category: Ingram JC]] | ||
[[Category: McPherson | [[Category: Iwata S]] | ||
[[Category: Newstead | [[Category: McPherson MJ]] | ||
[[Category: Postis | [[Category: Newstead S]] | ||
[[Category: Sansom | [[Category: Postis VL]] | ||
[[Category: Xia | [[Category: Sansom MSP]] | ||
[[Category: Xia X]] | |||
Latest revision as of 11:04, 23 August 2023
Crystal structure of a proton dependent oligopeptide (POT) family transporter.Crystal structure of a proton dependent oligopeptide (POT) family transporter.
Structural highlights
FunctionPublication Abstract from PubMedPepT1 and PepT2 are major facilitator superfamily (MFS) transporters that utilize a proton gradient to drive the uptake of di- and tri-peptides in the small intestine and kidney, respectively. They are the major routes by which we absorb dietary nitrogen and many orally administered drugs. Here, we present the crystal structure of PepT(So), a functionally similar prokaryotic homologue of the mammalian peptide transporters from Shewanella oneidensis. This structure, refined using data up to 3.6 A resolution, reveals a ligand-bound occluded state for the MFS and provides new insights into a general transport mechanism. We have located the peptide-binding site in a central hydrophilic cavity, which occludes a bound ligand from both sides of the membrane. Residues thought to be involved in proton coupling have also been identified near the extracellular gate of the cavity. Based on these findings and associated kinetic data, we propose that PepT(So) represents a sound model system for understanding mammalian peptide transport as catalysed by PepT1 and PepT2. Crystal structure of a prokaryotic homologue of the mammalian oligopeptide-proton symporters, PepT1 and PepT2.,Newstead S, Drew D, Cameron AD, Postis VL, Xia X, Fowler PW, Ingram JC, Carpenter EP, Sansom MS, McPherson MJ, Baldwin SA, Iwata S EMBO J. 2010 Dec 3. PMID:21131908[1] From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine. See AlsoReferences
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