2a08: Difference between revisions

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==Structure of the yeast YHH6 SH3 domain==
==Structure of the yeast YHH6 SH3 domain==
<StructureSection load='2a08' size='340' side='right' caption='[[2a08]], [[Resolution|resolution]] 1.54&Aring;' scene=''>
<StructureSection load='2a08' size='340' side='right'caption='[[2a08]], [[Resolution|resolution]] 1.54&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[2a08]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2A08 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2A08 FirstGlance]. <br>
<table><tr><td colspan='2'>[[2a08]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2A08 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2A08 FirstGlance]. <br>
</td></tr><tr><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1oot|1oot]], [[1ruw|1ruw]], [[1ssh|1ssh]], [[1tg0|1tg0]], [[1va7|1va7]], [[1wdx|1wdx]], [[1yn8|1yn8]], [[1ynz|1ynz]], [[1yp5|1yp5]], [[1z9z|1z9z]], [[1zuk|1zuk]], [[1zuu|1zuu]], [[1zuy|1zuy]], [[1zx6|1zx6]]</td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.54&#8491;</td></tr>
<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2a08 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2a08 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2a08 RCSB], [http://www.ebi.ac.uk/pdbsum/2a08 PDBsum]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2a08 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2a08 OCA], [https://pdbe.org/2a08 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2a08 RCSB], [https://www.ebi.ac.uk/pdbsum/2a08 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2a08 ProSAT]</span></td></tr>
<table>
</table>
== Function ==
[https://www.uniprot.org/uniprot/YSC84_YEAST YSC84_YEAST] Essential for the organization of the actin cytoskeleton, fluid phase endocytosis and vesicle trafficking, together with LSB5.<ref>PMID:12388763</ref>  
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
   <jmolCheckbox>
   <jmolCheckbox>
     <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/a0/2a08_consurf.spt"</scriptWhenChecked>
     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/a0/2a08_consurf.spt"</scriptWhenChecked>
     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
     <text>to colour the structure by Evolutionary Conservation</text>
     <text>to colour the structure by Evolutionary Conservation</text>
   </jmolCheckbox>
   </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2a08 ConSurf].
<div style="clear:both"></div>
<div style="clear:both"></div>
== References ==
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Large Structures]]
[[Category: Saccharomyces cerevisiae]]
[[Category: Saccharomyces cerevisiae]]
[[Category: Kursula, I.]]
[[Category: Kursula I]]
[[Category: Kursula, P]]
[[Category: Kursula P]]
[[Category: Lehmann, F.]]
[[Category: Lehmann F]]
[[Category: Song, Y H.]]
[[Category: Song YH]]
[[Category: Wilmanns, M.]]
[[Category: Wilmanns M]]
[[Category: Zou, P.]]
[[Category: Zou P]]
[[Category: Protein binding]]
[[Category: Sh3 domain]]
[[Category: Structural genomic]]
[[Category: Yeast]]

Latest revision as of 10:17, 23 August 2023

Structure of the yeast YHH6 SH3 domainStructure of the yeast YHH6 SH3 domain

Structural highlights

2a08 is a 2 chain structure with sequence from Saccharomyces cerevisiae. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 1.54Å
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

YSC84_YEAST Essential for the organization of the actin cytoskeleton, fluid phase endocytosis and vesicle trafficking, together with LSB5.[1]

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

References

  1. ↑ Dewar H, Warren DT, Gardiner FC, Gourlay CG, Satish N, Richardson MR, Andrews PD, Ayscough KR. Novel proteins linking the actin cytoskeleton to the endocytic machinery in Saccharomyces cerevisiae. Mol Biol Cell. 2002 Oct;13(10):3646-61. PMID:12388763 doi:http://dx.doi.org/10.1091/mbc.E02-05-0262

2a08, resolution 1.54Å

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