1zzm: Difference between revisions

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[[Image:1zzm.gif|left|200px]]


{{Structure
==Crystal structure of YJJV, TATD Homolog from Escherichia coli k12, at 1.8 A resolution==
|PDB= 1zzm |SIZE=350|CAPTION= <scene name='initialview01'>1zzm</scene>, resolution 1.80&Aring;
<StructureSection load='1zzm' size='340' side='right'caption='[[1zzm]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
|SITE=  
== Structural highlights ==
|LIGAND= <scene name='pdbligand=P33:3,6,9,12,15,18-HEXAOXAICOSANE-1,20-DIOL'>P33</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene>
<table><tr><td colspan='2'>[[1zzm]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ZZM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1ZZM FirstGlance]. <br>
|ACTIVITY=
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8&#8491;</td></tr>
|GENE=
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=P33:3,6,9,12,15,18-HEXAOXAICOSANE-1,20-DIOL'>P33</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01310 TatD_DNAse]</span>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1zzm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1zzm OCA], [https://pdbe.org/1zzm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1zzm RCSB], [https://www.ebi.ac.uk/pdbsum/1zzm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1zzm ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/1zzm TOPSAN]</span></td></tr>
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1zzm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1zzm OCA], [http://www.ebi.ac.uk/pdbsum/1zzm PDBsum], [http://www.fli-leibniz.de/cgi-bin/ImgLib.pl?CODE=1kfv JenaLib], [http://www.rcsb.org/pdb/explore.do?structureId=1zzm RCSB]</span>
</table>
}}
== Function ==
 
[https://www.uniprot.org/uniprot/YJJV_ECOLI YJJV_ECOLI] Putative deoxyribonuclease (By similarity).
'''Crystal structure of YJJV, TATD Homolog from Escherichia coli k12, at 1.8 A resolution'''
== Evolutionary Conservation ==
 
[[Image:Consurf_key_small.gif|200px|right]]
 
Check<jmol>
==About this Structure==
  <jmolCheckbox>
1ZZM is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ZZM OCA].  
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/zz/1zzm_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1zzm ConSurf].
<div style="clear:both"></div>
__TOC__
</StructureSection>
[[Category: Escherichia coli]]
[[Category: Escherichia coli]]
[[Category: Single protein]]
[[Category: Large Structures]]
[[Category: Almo, S C.]]
[[Category: Almo SC]]
[[Category: Burley, S K.]]
[[Category: Burley SK]]
[[Category: Malashkevich, V N.]]
[[Category: Malashkevich VN]]
[[Category: NYSGXRC, New York Structural GenomiX Research Consortium.]]
[[Category: Raushel FM]]
[[Category: Raushel, F M.]]
[[Category: Xiang DF]]
[[Category: Xiang, D F.]]
[[Category: crystal structure]]
[[Category: escherichia coli]]
[[Category: hydrolaze]]
[[Category: new york structural genomix research consortium]]
[[Category: nysgxrc]]
[[Category: peg]]
[[Category: protein structure initiative]]
[[Category: psi]]
[[Category: structural genomic]]
[[Category: yjjv]]
[[Category: zinc]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Mar 26 06:19:10 2008''

Latest revision as of 10:17, 23 August 2023

Crystal structure of YJJV, TATD Homolog from Escherichia coli k12, at 1.8 A resolutionCrystal structure of YJJV, TATD Homolog from Escherichia coli k12, at 1.8 A resolution

Structural highlights

1zzm is a 1 chain structure with sequence from Escherichia coli. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 1.8Å
Ligands:,
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT, TOPSAN

Function

YJJV_ECOLI Putative deoxyribonuclease (By similarity).

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

1zzm, resolution 1.80Å

Drag the structure with the mouse to rotate

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OCA
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