1zvc: Difference between revisions

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-[[Image:1zvc.gif|left|200px]]
- {{Structure
+==X-ray structure of allene oxide cyclase from arabidopsis thaliana AT3G25760==
-|PDB= 1zvc |SIZE=350|CAPTION= <scene name='initialview01'>1zvc</scene>, resolution 1.79&Aring;
+<StructureSection load='1zvc' size='340' side='right'caption='[[1zvc]], [[Resolution|resolution]] 1.79&Aring;' scene=''>
-|SITE= <scene name='pdbsite=AC1:Mg+Binding+Site+For+Residue+A+201'>AC1</scene>
+== Structural highlights ==
-|LIGAND= <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>
+<table><tr><td colspan='2'>[[1zvc]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ZVC OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1ZVC FirstGlance]. <br>
-|ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/Allene-oxide_cyclase Allene-oxide cyclase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=5.3.99.6 5.3.99.6] </span>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.79&#8491;</td></tr>
-|GENE= AT3G25760 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=3702 Arabidopsis thaliana])
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
-|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=pfam06351 Allene_ox_cyc]</span>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1zvc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1zvc OCA], [https://pdbe.org/1zvc PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1zvc RCSB], [https://www.ebi.ac.uk/pdbsum/1zvc PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1zvc ProSAT], [https://www.topsan.org/Proteins/CESG/1zvc TOPSAN]</span></td></tr>
-|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1zvc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1zvc OCA], [http://www.ebi.ac.uk/pdbsum/1zvc PDBsum], [http://www.fli-leibniz.de/cgi-bin/ImgLib.pl?CODE=1kfv JenaLib], [http://www.rcsb.org/pdb/explore.do?structureId=1zvc RCSB]</span>
+</table>
-}}
+== Function ==
+[https://www.uniprot.org/uniprot/AOC1_ARATH AOC1_ARATH] Involved in the production of 12-oxo-phytodienoic acid (OPDA), a precursor of jasmonic acid.
-'''X-ray structure of allene oxide cyclase from arabidopsis thaliana AT3G25760'''
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
-==About this Structure==
+  <jmolCheckbox>
-ZVC is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ZVC OCA].
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/zv/1zvc_consurf.spt"</scriptWhenChecked>
-[[Category: Allene-oxide cyclase]]
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1zvc ConSurf].
+<div style="clear:both"></div>
+__TOC__
+</StructureSection>
 [[Category: Arabidopsis thaliana]]
-[[Category: Single protein]]
+[[Category: Large Structures]]
-[[Category: Allard, S T.M.]]
+[[Category: Allard STM]]
-[[Category: Bingman, C A.]]
+[[Category: Bingman CA]]
-[[Category: Bitto, E.]]
+[[Category: Bitto E]]
-[[Category: CESG, Center for Eukaryotic Structural Genomics.]]
+[[Category: Han BW]]
-[[Category: Han, B W.]]
+[[Category: Phillips Jr GN]]
-[[Category: Jr., G N.Phillips.]]
+[[Category: Wesenberg GE]]
-[[Category: Wesenberg, G E.]]
-[[Category: at3g25760]]
-[[Category: center for eukaryotic structural genomic]]
-[[Category: cesg]]
-[[Category: isomerase]]
-[[Category: protein structure initiative]]
-[[Category: psi]]
-[[Category: structural genomic]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Mar 26 06:18:51 2008''