1yi7: Difference between revisions

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{{Seed}}
[[Image:1yi7.png|left|200px]]


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==Beta-d-xylosidase (selenomethionine) XYND from Clostridium Acetobutylicum==
The line below this paragraph, containing "STRUCTURE_1yi7", creates the "Structure Box" on the page.
<StructureSection load='1yi7' size='340' side='right'caption='[[1yi7]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)  
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[1yi7]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Clostridium_acetobutylicum_ATCC_824 Clostridium acetobutylicum ATCC 824]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YI7 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1YI7 FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9&#8491;</td></tr>
-->
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=EPE:4-(2-HYDROXYETHYL)-1-PIPERAZINE+ETHANESULFONIC+ACID'>EPE</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
{{STRUCTURE_1yi7| PDB=1yi7 |  SCENE= }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1yi7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1yi7 OCA], [https://pdbe.org/1yi7 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1yi7 RCSB], [https://www.ebi.ac.uk/pdbsum/1yi7 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1yi7 ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/1yi7 TOPSAN]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/Q97DM1_CLOAB Q97DM1_CLOAB]
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/yi/1yi7_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1yi7 ConSurf].
<div style="clear:both"></div>


===Beta-d-xylosidase (selenomethionine) XYND from Clostridium Acetobutylicum===
==See Also==
 
*[[Xylosidase 3D structures|Xylosidase 3D structures]]
 
__TOC__
==About this Structure==
</StructureSection>
1YI7 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Clostridium_acetobutylicum Clostridium acetobutylicum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YI7 OCA].
[[Category: Clostridium acetobutylicum ATCC 824]]
[[Category: Clostridium acetobutylicum]]
[[Category: Large Structures]]
[[Category: Single protein]]
[[Category: Almo SC]]
[[Category: Xylan 1,4-beta-xylosidase]]
[[Category: Burley SK]]
[[Category: Almo, S C.]]
[[Category: Fedorov E]]
[[Category: Burley, S K.]]
[[Category: Gilliland GL]]
[[Category: Fedorov, E.]]
[[Category: Teplyakov A]]
[[Category: Gilliland, G L.]]
[[Category: NYSGXRC, New York Structural GenomiX Research Consortium.]]
[[Category: Teplyakov, A.]]
[[Category: Beta-propeller]]
[[Category: Beta-sandwich]]
[[Category: New york structural genomix research consortium]]
[[Category: Nysgxrc]]
[[Category: Protein structure initiative]]
[[Category: Psi]]
[[Category: Structural genomic]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Sep 28 22:45:53 2008''

Latest revision as of 09:57, 23 August 2023

Beta-d-xylosidase (selenomethionine) XYND from Clostridium AcetobutylicumBeta-d-xylosidase (selenomethionine) XYND from Clostridium Acetobutylicum

Structural highlights

1yi7 is a 4 chain structure with sequence from Clostridium acetobutylicum ATCC 824. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 1.9Å
Ligands:, , , ,
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT, TOPSAN

Function

Q97DM1_CLOAB

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

See Also

1yi7, resolution 1.90Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA
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