1yi7: Difference between revisions

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-[[Image:1yi7.png|left|200px]]
-{{STRUCTURE_1yi7|  PDB=1yi7  |  SCENE=  }}
+==Beta-d-xylosidase (selenomethionine) XYND from Clostridium Acetobutylicum==
+<StructureSection load='1yi7' size='340' side='right'caption='[[1yi7]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
+== Structural highlights ==
+<table><tr><td colspan='2'>[[1yi7]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Clostridium_acetobutylicum_ATCC_824 Clostridium acetobutylicum ATCC 824]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YI7 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1YI7 FirstGlance]. <br>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9&#8491;</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=EPE:4-(2-HYDROXYETHYL)-1-PIPERAZINE+ETHANESULFONIC+ACID'>EPE</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1yi7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1yi7 OCA], [https://pdbe.org/1yi7 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1yi7 RCSB], [https://www.ebi.ac.uk/pdbsum/1yi7 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1yi7 ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/1yi7 TOPSAN]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/Q97DM1_CLOAB Q97DM1_CLOAB]
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/yi/1yi7_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1yi7 ConSurf].
+<div style="clear:both"></div>
-===Beta-d-xylosidase (selenomethionine) XYND from Clostridium Acetobutylicum===
+==See Also==
+*[[Xylosidase 3D structures|Xylosidase 3D structures]]
+__TOC__
-==About this Structure==
+</StructureSection>
-[[1yi7]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Clostridium_acetobutylicum Clostridium acetobutylicum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YI7 OCA].
+[[Category: Clostridium acetobutylicum ATCC 824]]
-[[Category: Clostridium acetobutylicum]]
+[[Category: Large Structures]]
-[[Category: Xylan 1,4-beta-xylosidase]]
+[[Category: Almo SC]]
-[[Category: Almo, S C.]]
+[[Category: Burley SK]]
-[[Category: Burley, S K.]]
+[[Category: Fedorov E]]
-[[Category: Fedorov, E.]]
+[[Category: Gilliland GL]]
-[[Category: Gilliland, G L.]]
+[[Category: Teplyakov A]]
-[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics.]]
-[[Category: Teplyakov, A.]]
-[[Category: Beta-propeller]]
-[[Category: Beta-sandwich]]
-[[Category: Hydrolase]]
-[[Category: New york sgx research center for structural genomic]]
-[[Category: Nysgxrc]]
-[[Category: Protein structure initiative]]
-[[Category: Psi]]
-[[Category: Structural genomic]]