1y1t: Difference between revisions

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-[[Image:1y1t.gif|left|200px]]
- {{Structure
+==Crystal Structure of the Uridine Phosphorylase from Salmonella Typhimurium at 1.77A Resolution==
-|PDB= 1y1t |SIZE=350|CAPTION= <scene name='initialview01'>1y1t</scene>, resolution 1.77&Aring;
+<StructureSection load='1y1t' size='340' side='right'caption='[[1y1t]], [[Resolution|resolution]] 1.77&Aring;' scene=''>
-|SITE=
+== Structural highlights ==
-|LIGAND= <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene> and <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>
+<table><tr><td colspan='2'>[[1y1t]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._LT2 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Y1T OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1Y1T FirstGlance]. <br>
-|ACTIVITY= [http://en.wikipedia.org/wiki/Uridine_phosphorylase Uridine phosphorylase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.4.2.3 2.4.2.3]
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.77&#8491;</td></tr>
-|GENE= UDP ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=602 Salmonella typhimurium])
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-}}
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1y1t FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1y1t OCA], [https://pdbe.org/1y1t PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1y1t RCSB], [https://www.ebi.ac.uk/pdbsum/1y1t PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1y1t ProSAT]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/UDP_SALTY UDP_SALTY] Catalyzes the reversible phosphorylytic cleavage of uridine and deoxyuridine to uracil and ribose- or deoxyribose-1-phosphate. The produced molecules are then utilized as carbon and energy sources or in the rescue of pyrimidine bases for nucleotide synthesis (By similarity).
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/y1/1y1t_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1y1t ConSurf].
+<div style="clear:both"></div>
-'''Crystal Structure of the Uridine Phosphorylase from Salmonella Typhimurium at 1.77A Resolution'''
+==See Also==
+*[[Uridine phosphorylase 3D structures|Uridine phosphorylase 3D structures]]
+__TOC__
-==About this Structure==
+</StructureSection>
-Y1T is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Salmonella_typhimurium Salmonella typhimurium]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Y1T OCA].
+[[Category: Large Structures]]
-[[Category: Salmonella typhimurium]]
+[[Category: Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]]
-[[Category: Single protein]]
+[[Category: Betzel C]]
-[[Category: Uridine phosphorylase]]
+[[Category: Dontsova MV]]
-[[Category: Betzel, C.]]
+[[Category: Ealick SE]]
-[[Category: Dontsova, M V.]]
+[[Category: Gabdoulkhakov AG]]
-[[Category: Ealick, S E.]]
+[[Category: Kachalova GS]]
-[[Category: Gabdoulkhakov, A G.]]
+[[Category: Mikhailov AM]]
-[[Category: Kachalova, G S.]]
-[[Category: Mikhailov, A M.]]
-[[Category: GOL]]
-[[Category: SO4]]
-[[Category: nucleoside phosphorylase]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 15:17:23 2008''