1xi9: Difference between revisions

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[[Image:1xi9.png|left|200px]]


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==Alanine aminotransferase from Pyrococcus furiosus Pfu-1397077-001==
The line below this paragraph, containing "STRUCTURE_1xi9", creates the "Structure Box" on the page.
<StructureSection load='1xi9' size='340' side='right'caption='[[1xi9]], [[Resolution|resolution]] 2.33&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[1xi9]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Pyrococcus_furiosus_DSM_3638 Pyrococcus furiosus DSM 3638]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XI9 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1XI9 FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.33&#8491;</td></tr>
-->
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PLP:PYRIDOXAL-5-PHOSPHATE'>PLP</scene></td></tr>
{{STRUCTURE_1xi9|  PDB=1xi9  |  SCENE=  }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1xi9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xi9 OCA], [https://pdbe.org/1xi9 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1xi9 RCSB], [https://www.ebi.ac.uk/pdbsum/1xi9 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1xi9 ProSAT], [https://www.topsan.org/Proteins/SECSG/1xi9 TOPSAN]</span></td></tr>
 
</table>
===Alanine aminotransferase from Pyrococcus furiosus Pfu-1397077-001===
== Function ==
 
[https://www.uniprot.org/uniprot/Q9P9M8_9EURY Q9P9M8_9EURY]  
 
== Evolutionary Conservation ==
==About this Structure==
[[Image:Consurf_key_small.gif|200px|right]]
1XI9 is a 4 chains structure of sequences from [http://en.wikipedia.org/wiki/Pyrococcus_furiosus_dsm_3638 Pyrococcus furiosus dsm 3638]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XI9 OCA].  
Check<jmol>
[[Category: Pyrococcus furiosus dsm 3638]]
  <jmolCheckbox>
[[Category: Adams, M W.W.]]
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/xi/1xi9_consurf.spt"</scriptWhenChecked>
[[Category: Brereton, P S.]]
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
[[Category: Chang, S H.]]
    <text>to colour the structure by Evolutionary Conservation</text>
[[Category: Chen, L.]]
  </jmolCheckbox>
[[Category: II, F L.Poole.]]
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1xi9 ConSurf].
[[Category: III, W B.Arendall.]]
<div style="clear:both"></div>
[[Category: Izumi, M.]]
__TOC__
[[Category: Jr., F E.Jenney.]]
</StructureSection>
[[Category: Lee, D.]]
[[Category: Large Structures]]
[[Category: Lee, H S.]]
[[Category: Pyrococcus furiosus DSM 3638]]
[[Category: Lin, D.]]
[[Category: Adams MWW]]
[[Category: Liu, Z J.]]
[[Category: Arendall III WB]]
[[Category: Richardson, D C.]]
[[Category: Brereton PS]]
[[Category: Richardson, J S.]]
[[Category: Chang S-H]]
[[Category: Rose, J P.]]
[[Category: Chen L]]
[[Category: SECSG, Southeast Collaboratory for Structural Genomics.]]
[[Category: Izumi M]]
[[Category: Shah, A.]]
[[Category: Jenney Jr FE]]
[[Category: Shah, C.]]
[[Category: Lee D]]
[[Category: Sugar, F J.]]
[[Category: Lee H-S]]
[[Category: Tempel, W.]]
[[Category: Lin D]]
[[Category: Wang, B C.]]
[[Category: Liu Z-J]]
[[Category: Zhou, W.]]
[[Category: Poole II FL]]
[[Category: Alanine aminotransferase]]
[[Category: Richardson DC]]
[[Category: Hyperthermophile]]
[[Category: Richardson JS]]
[[Category: Protein structure initiative]]
[[Category: Rose JP]]
[[Category: Psi]]
[[Category: Shah A]]
[[Category: Pyrococcus furiosus]]
[[Category: Shah C]]
[[Category: Secsg]]
[[Category: Sugar FJ]]
[[Category: Southeast collaboratory for structural genomic]]
[[Category: Tempel W]]
 
[[Category: Wang B-C]]
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Nov 16 11:08:54 2008''
[[Category: Zhou W]]

Latest revision as of 09:45, 23 August 2023

Alanine aminotransferase from Pyrococcus furiosus Pfu-1397077-001Alanine aminotransferase from Pyrococcus furiosus Pfu-1397077-001

Structural highlights

1xi9 is a 4 chain structure with sequence from Pyrococcus furiosus DSM 3638. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 2.33Å
Ligands:
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT, TOPSAN

Function

Q9P9M8_9EURY

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

1xi9, resolution 2.33Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA
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