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[[Image:1vrn.gif|left|200px]]


{{Structure
==PHOTOSYNTHETIC REACTION CENTER BLASTOCHLORIS VIRIDIS (ATCC)==
|PDB= 1vrn |SIZE=350|CAPTION= <scene name='initialview01'>1vrn</scene>, resolution 2.20&Aring;
<StructureSection load='1vrn' size='340' side='right'caption='[[1vrn]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
|SITE=  
== Structural highlights ==
|LIGAND= <scene name='pdbligand=FE2:FE+(II)+ION'>FE2</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=BCB:BACTERIOCHLOROPHYLL+B'>BCB</scene>, <scene name='pdbligand=BPB:BACTERIOPHEOPHYTIN+B'>BPB</scene>, <scene name='pdbligand=MQ9:MENAQUINONE-9'>MQ9</scene>, <scene name='pdbligand=UQ7:UBIQUINONE-7'>UQ7</scene>, <scene name='pdbligand=NS5:DIHYDRO-NEUROSPORENE'>NS5</scene> and <scene name='pdbligand=LDA:LAURYL DIMETHYLAMINE-N-OXIDE'>LDA</scene>
<table><tr><td colspan='2'>[[1vrn]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Blastochloris_viridis Blastochloris viridis]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1txw 1txw]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VRN OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1VRN FirstGlance]. <br>
|ACTIVITY=  
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.2&#8491;</td></tr>
|GENE=  
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BCB:BACTERIOCHLOROPHYLL+B'>BCB</scene>, <scene name='pdbligand=BPB:BACTERIOPHEOPHYTIN+B'>BPB</scene>, <scene name='pdbligand=FE2:FE+(II)+ION'>FE2</scene>, <scene name='pdbligand=FME:N-FORMYLMETHIONINE'>FME</scene>, <scene name='pdbligand=HEC:HEME+C'>HEC</scene>, <scene name='pdbligand=LDA:LAURYL+DIMETHYLAMINE-N-OXIDE'>LDA</scene>, <scene name='pdbligand=MQ9:MENAQUINONE-9'>MQ9</scene>, <scene name='pdbligand=NS5:15-CIS-1,2-DIHYDRONEUROSPORENE'>NS5</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=UQ7:UBIQUINONE-7'>UQ7</scene></td></tr>
}}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1vrn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1vrn OCA], [https://pdbe.org/1vrn PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1vrn RCSB], [https://www.ebi.ac.uk/pdbsum/1vrn PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1vrn ProSAT]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/CYCR_BLAVI CYCR_BLAVI] The reaction center of purple bacteria contains a tightly bound cytochrome molecule which re-reduces the photo oxidized primary electron donor.<ref>PMID:10736158</ref>
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vr/1vrn_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1vrn ConSurf].
<div style="clear:both"></div>
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
The structure of the Blastochloris viridis photosynthetic reaction center has been determined at 100 K by flash-freezing crystals. A data set to 2.2 A resolution provides a well determined model of the wild-type protein. Of particular interest are the position, occupancy and heterogeneity of the Q(B)-binding site. Data were also collected from a crystal frozen immediately after illumination. The data support predominant binding of Q(B) in the proximal position in both the neutral and charge-separated states.


'''PHOTOSYNTHETIC REACTION CENTER BLASTOCHLORIS VIRIDIS (ATCC)'''
Cryogenic structure of the photosynthetic reaction center of Blastochloris viridis in the light and dark.,Baxter RH, Seagle BL, Ponomarenko N, Norris JR Acta Crystallogr D Biol Crystallogr. 2005 May;61(Pt 5):605-12. Epub 2005, Apr 20. PMID:15858271<ref>PMID:15858271</ref>


From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
<div class="pdbe-citations 1vrn" style="background-color:#fffaf0;"></div>


==Overview==
==See Also==
The structure of the Blastochloris viridis photosynthetic reaction center has been determined at 100 K by flash-freezing crystals. A data set to 2.2 A resolution provides a well determined model of the wild-type protein. Of particular interest are the position, occupancy and heterogeneity of the Q(B)-binding site. Data were also collected from a crystal frozen immediately after illumination. The data support predominant binding of Q(B) in the proximal position in both the neutral and charge-separated states.
*[[Cytochrome C 3D structures|Cytochrome C 3D structures]]
 
== References ==
==About this Structure==
<references/>
1VRN is a [[Protein complex]] structure of sequences from [http://en.wikipedia.org/wiki/Blastochloris_viridis Blastochloris viridis]. This structure supersedes the now removed PDB entry 1TXW. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VRN OCA].
__TOC__
 
</StructureSection>
==Reference==
Cryogenic structure of the photosynthetic reaction center of Blastochloris viridis in the light and dark., Baxter RH, Seagle BL, Ponomarenko N, Norris JR, Acta Crystallogr D Biol Crystallogr. 2005 May;61(Pt 5):605-12. Epub 2005, Apr 20. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/15858271 15858271]
[[Category: Blastochloris viridis]]
[[Category: Blastochloris viridis]]
[[Category: Protein complex]]
[[Category: Large Structures]]
[[Category: Baxter, R H.G.]]
[[Category: Baxter RHG]]
[[Category: Norris, J R.]]
[[Category: Norris JR]]
[[Category: Seagle, B L.]]
[[Category: Seagle B-L]]
[[Category: BCB]]
[[Category: BPB]]
[[Category: FE2]]
[[Category: HEM]]
[[Category: LDA]]
[[Category: MQ9]]
[[Category: NS5]]
[[Category: SO4]]
[[Category: UQ7]]
[[Category: integral membrane protein; ubiquinone; secondary quinone (qb)]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 14:48:50 2008''

Latest revision as of 09:41, 23 August 2023

PHOTOSYNTHETIC REACTION CENTER BLASTOCHLORIS VIRIDIS (ATCC)PHOTOSYNTHETIC REACTION CENTER BLASTOCHLORIS VIRIDIS (ATCC)

Structural highlights

1vrn is a 4 chain structure with sequence from Blastochloris viridis. This structure supersedes the now removed PDB entry 1txw. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 2.2Å
Ligands:, , , , , , , , ,
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

CYCR_BLAVI The reaction center of purple bacteria contains a tightly bound cytochrome molecule which re-reduces the photo oxidized primary electron donor.[1]

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

Publication Abstract from PubMed

The structure of the Blastochloris viridis photosynthetic reaction center has been determined at 100 K by flash-freezing crystals. A data set to 2.2 A resolution provides a well determined model of the wild-type protein. Of particular interest are the position, occupancy and heterogeneity of the Q(B)-binding site. Data were also collected from a crystal frozen immediately after illumination. The data support predominant binding of Q(B) in the proximal position in both the neutral and charge-separated states.

Cryogenic structure of the photosynthetic reaction center of Blastochloris viridis in the light and dark.,Baxter RH, Seagle BL, Ponomarenko N, Norris JR Acta Crystallogr D Biol Crystallogr. 2005 May;61(Pt 5):605-12. Epub 2005, Apr 20. PMID:15858271[2]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

See Also

References

  1. ↑ Chen IP, Mathis P, Koepke J, Michel H. Uphill electron transfer in the tetraheme cytochrome subunit of the Rhodopseudomonas viridis photosynthetic reaction center: evidence from site-directed mutagenesis. Biochemistry. 2000 Apr 4;39(13):3592-602. PMID:10736158
  2. ↑ Baxter RH, Seagle BL, Ponomarenko N, Norris JR. Cryogenic structure of the photosynthetic reaction center of Blastochloris viridis in the light and dark. Acta Crystallogr D Biol Crystallogr. 2005 May;61(Pt 5):605-12. Epub 2005, Apr 20. PMID:15858271 doi:10.1107/S0907444905005809

1vrn, resolution 2.20Å

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