1tj2: Difference between revisions

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 ==Crystal structure of E. coli PutA proline dehydrogenase domain (residues 86-669) complexed with acetate==
-<StructureSection load='1tj2' size='340' side='right' caption='[[1tj2]], [[Resolution|resolution]] 2.05&Aring;' scene=''>
+<StructureSection load='1tj2' size='340' side='right'caption='[[1tj2]], [[Resolution|resolution]] 2.05&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[1tj2]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_coli"_migula_1895 "bacillus coli" migula 1895]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1TJ2 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1TJ2 FirstGlance]. <br>
+<table><tr><td colspan='2'>[[1tj2]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1TJ2 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1TJ2 FirstGlance]. <br>
-</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene></td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.05&#8491;</td></tr>
-<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1tiw|1tiw]], [[1tj0|1tj0]], [[1k87|1k87]], [[1tj1|1tj1]]</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene></td></tr>
-<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">PUTA, POAA, B1014 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 "Bacillus coli" Migula 1895])</td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1tj2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1tj2 OCA], [https://pdbe.org/1tj2 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1tj2 RCSB], [https://www.ebi.ac.uk/pdbsum/1tj2 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1tj2 ProSAT]</span></td></tr>
-<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Proline_dehydrogenase Proline dehydrogenase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.5.99.8 1.5.99.8] </span></td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1tj2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1tj2 OCA], [http://pdbe.org/1tj2 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1tj2 RCSB], [http://www.ebi.ac.uk/pdbsum/1tj2 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1tj2 ProSAT]</span></td></tr>
 </table>
 == Function ==
-[[http://www.uniprot.org/uniprot/PUTA_ECOLI PUTA_ECOLI]] Oxidizes proline to glutamate for use as a carbon and nitrogen source and also function as a transcriptional repressor of the put operon.
+[https://www.uniprot.org/uniprot/PUTA_ECOLI PUTA_ECOLI] Oxidizes proline to glutamate for use as a carbon and nitrogen source and also function as a transcriptional repressor of the put operon.
 == Evolutionary Conservation ==
 [[Image:Consurf_key_small.gif|200px|right]]
@@ Line 38: / Line 36: @@
 __TOC__
 </StructureSection>
-[[Category: Bacillus coli migula 1895]]
+[[Category: Escherichia coli]]
-[[Category: Proline dehydrogenase]]
+[[Category: Large Structures]]
-[[Category: Baban, B A]]
+[[Category: Baban BA]]
-[[Category: Becker, D F]]
+[[Category: Becker DF]]
-[[Category: Schuermann, J P]]
+[[Category: Schuermann JP]]
-[[Category: Tanner, J J]]
+[[Category: Tanner JJ]]
-[[Category: White, T A]]
+[[Category: White TA]]
-[[Category: Zhang, M]]
+[[Category: Zhang M]]
-[[Category: Beta/alpha barrel]]
-[[Category: Fad]]
-[[Category: Flavoenzyme]]
-[[Category: Oxidoreductase]]
-[[Category: Proline catabolism]]