1sv4: Difference between revisions

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Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA

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 ==Crystal Structure of Yan-SAM==
-<StructureSection load='1sv4' size='340' side='right' caption='[[1sv4]], [[Resolution|resolution]] 2.15&Aring;' scene=''>
+<StructureSection load='1sv4' size='340' side='right'caption='[[1sv4]], [[Resolution|resolution]] 2.15&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[1sv4]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Drome Drome]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1SV4 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1SV4 FirstGlance]. <br>
+<table><tr><td colspan='2'>[[1sv4]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Drosophila_melanogaster Drosophila melanogaster]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1SV4 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1SV4 FirstGlance]. <br>
-</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1sv0|1sv0]]</td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.15&#8491;</td></tr>
-<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">AOP, POK, YAN, CG3166 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=7227 DROME])</td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1sv4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1sv4 OCA], [https://pdbe.org/1sv4 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1sv4 RCSB], [https://www.ebi.ac.uk/pdbsum/1sv4 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1sv4 ProSAT]</span></td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1sv4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1sv4 OCA], [http://pdbe.org/1sv4 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1sv4 RCSB], [http://www.ebi.ac.uk/pdbsum/1sv4 PDBsum]</span></td></tr>
 </table>
 == Function ==
-[[http://www.uniprot.org/uniprot/POK_DROME POK_DROME]] Negative regulator of photoreceptor development that acts antagonistically to the proneural signal mediated by RAS. It acts upstream of SINA to inhibit R7 development.<ref>PMID:1505027</ref> <ref>PMID:1495974</ref>
+[https://www.uniprot.org/uniprot/POK_DROME POK_DROME] Negative regulator of photoreceptor development that acts antagonistically to the proneural signal mediated by RAS. It acts upstream of SINA to inhibit R7 development.<ref>PMID:1505027</ref> <ref>PMID:1495974</ref>
 == Evolutionary Conservation ==
 [[Image:Consurf_key_small.gif|200px|right]]
 Check<jmol>
    <jmolCheckbox>
-     <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/sv/1sv4_consurf.spt"</scriptWhenChecked>
+     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/sv/1sv4_consurf.spt"</scriptWhenChecked>
      <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
      <text>to colour the structure by Evolutionary Conservation</text>
    </jmolCheckbox>
-</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1sv4 ConSurf].
 <div style="clear:both"></div>
 <div style="background-color:#fffaf0;">
@@ Line 32: / Line 32: @@
 __TOC__
 </StructureSection>
-[[Category: Drome]]
+[[Category: Drosophila melanogaster]]
-[[Category: Bowie, J U]]
+[[Category: Large Structures]]
-[[Category: Courey, A J]]
+[[Category: Bowie JU]]
-[[Category: Gingery, M]]
+[[Category: Courey AJ]]
-[[Category: Hunter, J B]]
+[[Category: Gingery M]]
-[[Category: Kim, C A]]
+[[Category: Hunter JB]]
-[[Category: Qiao, F]]
+[[Category: Kim CA]]
-[[Category: Rebay, I]]
+[[Category: Qiao F]]
-[[Category: Sawaya, M R]]
+[[Category: Rebay I]]
-[[Category: Song, H]]
+[[Category: Sawaya MR]]
-[[Category: Alpha-helix]]
+[[Category: Song H]]
-[[Category: Transcription]]