1spx: Difference between revisions

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-[[Image:1spx.gif|left|200px]]
- {{Structure
+==Crystal Structure of Glucose Dehydrogenase of Caenorhabditis Elegans in the Apo-Form==
-|PDB= 1spx |SIZE=350|CAPTION= <scene name='initialview01'>1spx</scene>, resolution 2.10&Aring;
+<StructureSection load='1spx' size='340' side='right'caption='[[1spx]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
-|SITE=
+== Structural highlights ==
-|LIGAND=
+<table><tr><td colspan='2'>[[1spx]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Caenorhabditis_elegans Caenorhabditis elegans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1SPX OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1SPX FirstGlance]. <br>
-|ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/Glucose_1-dehydrogenase Glucose 1-dehydrogenase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.1.1.47 1.1.1.47] </span>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.1&#8491;</td></tr>
-|GENE= D1054.8 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=6239 Caenorhabditis elegans])
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1spx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1spx OCA], [https://pdbe.org/1spx PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1spx RCSB], [https://www.ebi.ac.uk/pdbsum/1spx PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1spx ProSAT], [https://www.topsan.org/Proteins/SECSG/1spx TOPSAN]</span></td></tr>
-|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PRK12825 fabG], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1028 FabG]</span>
+</table>
-|RELATEDENTRY=
+== Function ==
-|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1spx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1spx OCA], [http://www.ebi.ac.uk/pdbsum/1spx PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1spx RCSB]</span>
+[https://www.uniprot.org/uniprot/Q18946_CAEEL Q18946_CAEEL]
-}}
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
-'''Crystal Structure of Glucose Dehydrogenase of Caenorhabditis Elegans in the Apo-Form'''
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/sp/1spx_consurf.spt"</scriptWhenChecked>
-==About this Structure==
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-SPX is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Caenorhabditis_elegans Caenorhabditis elegans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1SPX OCA].
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1spx ConSurf].
+<div style="clear:both"></div>
+__TOC__
+</StructureSection>
 [[Category: Caenorhabditis elegans]]
-[[Category: Glucose 1-dehydrogenase]]
+[[Category: Large Structures]]
-[[Category: Single protein]]
+[[Category: Arabashi A]]
-[[Category: Arabashi, A.]]
+[[Category: Bray T]]
-[[Category: Bray, T.]]
+[[Category: Bunzel B]]
-[[Category: Bunzel, B.]]
+[[Category: Carson M]]
-[[Category: Carson, M.]]
+[[Category: Gray R]]
-[[Category: Gray, R.]]
+[[Category: Huang W-Y]]
-[[Category: Huang, W Y.]]
+[[Category: Li S]]
-[[Category: Li, S.]]
+[[Category: Lin G]]
-[[Category: Lin, G.]]
+[[Category: Lu S]]
-[[Category: Lu, S.]]
+[[Category: Luan C-H]]
-[[Category: Luan, C H.]]
+[[Category: Luo D]]
-[[Category: Luo, D.]]
+[[Category: Luo M]]
-[[Category: Luo, M.]]
+[[Category: McCombs D]]
-[[Category: McCombs, D.]]
+[[Category: Nagy L]]
-[[Category: Nagy, L.]]
+[[Category: Qiu S]]
-[[Category: Qiu, S.]]
+[[Category: Schormann N]]
-[[Category: SECSG, Southeast Collaboratory for Structural Genomics.]]
+[[Category: Symersky J]]
-[[Category: Schormann, N.]]
+[[Category: Tsao J]]
-[[Category: Symersky, J.]]
+[[Category: Zhang Y]]
-[[Category: Tsao, J.]]
+[[Category: Zhou J]]
-[[Category: Zhang, Y.]]
-[[Category: Zhou, J.]]
-[[Category: parallel beta-sheet of seven strands in the order 3214567]]
-[[Category: protein structure initiative]]
-[[Category: psi]]
-[[Category: secsg]]
-[[Category: seventh alpha-helix on top of beta-sheet]]
-[[Category: southeast collaboratory for structural genomic]]
-[[Category: structural genomic]]
-[[Category: three alpha-helices on either side of beta-sheet]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Mar 30 23:45:26 2008''