1rye: Difference between revisions

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA

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-[[Image:1rye.gif|left|200px]]<br /><applet load="1rye" size="450" color="white" frame="true" align="right" spinBox="true"
-caption="1rye, resolution 2.30&Aring;" />
-'''Crystal Structure of the Shifted Form of the Glucose-Fructose Oxidoreductase from Zymomonas mobilis'''<br />
-==About this Structure==
+==Crystal Structure of the Shifted Form of the Glucose-Fructose Oxidoreductase from Zymomonas mobilis==
-RYE is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Zymomonas_mobilis Zymomonas mobilis] with NDP, BME and GOL as [http://en.wikipedia.org/wiki/ligands ligands]. Active as [http://en.wikipedia.org/wiki/Glucose--fructose_oxidoreductase Glucose--fructose oxidoreductase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.1.99.28 1.1.99.28] Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1RYE OCA].
+<StructureSection load='1rye' size='340' side='right'caption='[[1rye]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
-[[Category: Glucose--fructose oxidoreductase]]
+== Structural highlights ==
-[[Category: Single protein]]
+<table><tr><td colspan='2'>[[1rye]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Zymomonas_mobilis Zymomonas mobilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1RYE OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1RYE FirstGlance]. <br>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.3&#8491;</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BME:BETA-MERCAPTOETHANOL'>BME</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NDP:NADPH+DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE+PHOSPHATE'>NDP</scene></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1rye FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1rye OCA], [https://pdbe.org/1rye PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1rye RCSB], [https://www.ebi.ac.uk/pdbsum/1rye PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1rye ProSAT]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/GFO_ZYMMO GFO_ZYMMO]
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ry/1rye_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1rye ConSurf].
+<div style="clear:both"></div>
+==See Also==
+*[[Glucose-fructose oxidoreductase|Glucose-fructose oxidoreductase]]
+__TOC__
+</StructureSection>
+[[Category: Large Structures]]
 [[Category: Zymomonas mobilis]]
-[[Category: Arora, M.]]
+[[Category: Arora M]]
-[[Category: Donnelly, M.]]
+[[Category: Donnelly M]]
-[[Category: Joachimiak, A.]]
+[[Category: Joachimiak A]]
-[[Category: Kim, Y.]]
+[[Category: Kim Y]]
-[[Category: Straza, M.]]
+[[Category: Straza M]]
-[[Category: BME]]
-[[Category: GOL]]
-[[Category: NDP]]
-[[Category: fructose]]
-[[Category: glucose]]
-[[Category: nadp]]
-[[Category: oxidoreductase shifted form]]
-[[Category: zymomonas mobilis]]
-''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Wed Nov 21 01:57:32 2007''