5hr9: Difference between revisions

← Older edit

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA

@@ Line 1: / Line 1: @@
 ==The crystal structure of Se-AsfvPolX(L52/163M mutant) in complex with 1nt-gap DNA1==
-<StructureSection load='5hr9' size='340' side='right' caption='[[5hr9]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
+<StructureSection load='5hr9' size='340' side='right'caption='[[5hr9]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[5hr9]] is a 8 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5HR9 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5HR9 FirstGlance]. <br>
+<table><tr><td colspan='2'>[[5hr9]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/African_swine_fever_virus African swine fever virus] and [https://en.wikipedia.org/wiki/Synthetic_construct Synthetic construct]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5HR9 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5HR9 FirstGlance]. <br>
-</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.2&#8491;</td></tr>
-<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[5hrb|5hrb]], [[5hrd|5hrd]], [[5hre|5hre]], [[5hrf|5hrf]], [[5hrg|5hrg]], [[5hrh|5hrh]], [[5hri|5hri]], [[5hrk|5hrk]], [[5hrl|5hrl]]</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5hr9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5hr9 OCA], [http://pdbe.org/5hr9 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5hr9 RCSB], [http://www.ebi.ac.uk/pdbsum/5hr9 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5hr9 ProSAT]</span></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5hr9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5hr9 OCA], [https://pdbe.org/5hr9 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5hr9 RCSB], [https://www.ebi.ac.uk/pdbsum/5hr9 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5hr9 ProSAT]</span></td></tr>
 </table>
+== Function ==
+[https://www.uniprot.org/uniprot/DPOLX_ASFB7 DPOLX_ASFB7] Error-prone polymerase lacking a proofreading 3'-5' exonuclease which plays a role in viral DNA repair. Specifically binds intermediates in the single-nucleotide base-excision repair process. Also catalyzes DNA polymerization with low nucleotide-insertion fidelity. Together with the viral DNA ligase, fills the single nucleotide gaps generated by the AP endonuclease.<ref>PMID:12595253</ref> <ref>PMID:11685239</ref>
+==See Also==
+*[[DNA polymerase 3D structures|DNA polymerase 3D structures]]
+== References ==
+<references/>
 __TOC__
 </StructureSection>
-[[Category: Chen, Y Q]]
+[[Category: African swine fever virus]]
-[[Category: Gan, J H]]
+[[Category: Large Structures]]
-[[Category: Zhang, J]]
+[[Category: Synthetic construct]]
-[[Category: Asfv]]
+[[Category: Chen YQ]]
-[[Category: Polx]]
+[[Category: Gan JH]]
-[[Category: Transferase-dna complex]]
+[[Category: Zhang J]]