1pyb: Difference between revisions

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-==Crystal Structure of Aquifex aeolicus Trbp111: a Stucture-Specific tRNA Binding Protein==
-<StructureSection load='1pyb' size='340' side='right' caption='[[1pyb]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
+==Crystal Structure of Aquifex aeolicus Trbp111: a Structure-Specific tRNA Binding Protein==
+<StructureSection load='1pyb' size='340' side='right'caption='[[1pyb]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[1pyb]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Aquifex_aeolicus Aquifex aeolicus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1PYB OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1PYB FirstGlance]. <br>
+<table><tr><td colspan='2'>[[1pyb]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Aquifex_aeolicus Aquifex aeolicus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1PYB OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1PYB FirstGlance]. <br>
-</td></tr><tr><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1pxf|1pxf]]</td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.5&#8491;</td></tr>
-<tr><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">metG ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=63363 Aquifex aeolicus])</td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1pyb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1pyb OCA], [https://pdbe.org/1pyb PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1pyb RCSB], [https://www.ebi.ac.uk/pdbsum/1pyb PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1pyb ProSAT]</span></td></tr>
-<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1pyb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1pyb OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1pyb RCSB], [http://www.ebi.ac.uk/pdbsum/1pyb PDBsum]</span></td></tr>
+</table>
-<table>
+== Function ==
+[https://www.uniprot.org/uniprot/O66738_AQUAE O66738_AQUAE]
 == Evolutionary Conservation ==
 [[Image:Consurf_key_small.gif|200px|right]]
 Check<jmol>
    <jmolCheckbox>
-     <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/py/1pyb_consurf.spt"</scriptWhenChecked>
+     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/py/1pyb_consurf.spt"</scriptWhenChecked>
      <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
      <text>to colour the structure by Evolutionary Conservation</text>
    </jmolCheckbox>
-</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1pyb ConSurf].
 <div style="clear:both"></div>
 <div style="background-color:#fffaf0;">
@@ Line 25: / Line 27: @@
 From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 </div>
+<div class="pdbe-citations 1pyb" style="background-color:#fffaf0;"></div>
 ==See Also==
-*[[Aminoacyl tRNA Synthetase|Aminoacyl tRNA Synthetase]]
+*[[Aminoacyl tRNA synthetase 3D structures|Aminoacyl tRNA synthetase 3D structures]]
 == References ==
 <references/>
@@ Line 33: / Line 36: @@
 </StructureSection>
 [[Category: Aquifex aeolicus]]
-[[Category: Morales, A J.]]
+[[Category: Large Structures]]
-[[Category: Ortiz, A R.]]
+[[Category: Morales AJ]]
-[[Category: Schimmel, P.]]
+[[Category: Ortiz AR]]
-[[Category: Swairjo, M A.]]
+[[Category: Schimmel P]]
-[[Category: Wang, C C.]]
+[[Category: Swairjo MA]]
-[[Category: Beta-barrel]]
+[[Category: Wang CC]]
-[[Category: Ob-fold]]
-[[Category: Oligonucleotide]]
-[[Category: Oligosaccharide-binding fold]]
-[[Category: Rna binding protein]]