1phq: Difference between revisions

← Older edit

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA

@@ Line 1: / Line 1: @@
-[[Image:1phq.jpg|left|200px]]
- {{Structure
+==Crystal structure of KDO8P synthase in its binary complex with substrate analog E-FPEP==
-|PDB= 1phq |SIZE=350|CAPTION= <scene name='initialview01'>1phq</scene>, resolution 2.7&Aring;
+<StructureSection load='1phq' size='340' side='right'caption='[[1phq]], [[Resolution|resolution]] 2.70&Aring;' scene=''>
-|SITE=
+== Structural highlights ==
-|LIGAND= <scene name='pdbligand=FPE:3-FLUORO-2-(PHOSPHONOOXY)PROPANOIC ACID'>FPE</scene>
+<table><tr><td colspan='2'>[[1phq]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1PHQ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1PHQ FirstGlance]. <br>
-|ACTIVITY= [http://en.wikipedia.org/wiki/3-deoxy-8-phosphooctulonate_synthase 3-deoxy-8-phosphooctulonate synthase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.5.1.55 2.5.1.55]
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.7&#8491;</td></tr>
-|GENE= KDSA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 Escherichia coli])
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FPE:3-FLUORO-2-(PHOSPHONOOXY)PROPANOIC+ACID'>FPE</scene></td></tr>
-}}
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1phq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1phq OCA], [https://pdbe.org/1phq PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1phq RCSB], [https://www.ebi.ac.uk/pdbsum/1phq PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1phq ProSAT]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/KDSA_ECOLI KDSA_ECOLI] Synthesis of KDO 8-P which is required for lipid A maturation and cellular growth.[HAMAP-Rule:MF_00056]
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ph/1phq_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1phq ConSurf].
+<div style="clear:both"></div>
-'''Crystal structure of KDO8P synthase in its binary complex with substrate analog E-FPEP'''
+==See Also==
+*[[Kdo-8-phosphate synthase|Kdo-8-phosphate synthase]]
+__TOC__
-==About this Structure==
+</StructureSection>
-PHQ is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1PHQ OCA].
-[[Category: 3-deoxy-8-phosphooctulonate synthase]]
 [[Category: Escherichia coli]]
-[[Category: Single protein]]
+[[Category: Large Structures]]
-[[Category: Adir, N.]]
+[[Category: Adir N]]
-[[Category: Baasov, T.]]
+[[Category: Baasov T]]
-[[Category: Belakhov, V.]]
+[[Category: Belakhov V]]
-[[Category: Rabkin, E.]]
+[[Category: Rabkin E]]
-[[Category: Vainer, R.]]
+[[Category: Vainer R]]
-[[Category: FPE]]
-[[Category: beta-alpha-barrel]]
-[[Category: fluorinated analog]]
-[[Category: lipopolysaccharide]]
-[[Category: lyase]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 13:24:30 2008''