1ooj: Difference between revisions

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-[[Image:1ooj.jpg|left|200px]]
-<!--
+==Structural genomics of Caenorhabditis elegans : Calmodulin==
-The line below this paragraph, containing "STRUCTURE_1ooj", creates the "Structure Box" on the page.
+<StructureSection load='1ooj' size='340' side='right'caption='[[1ooj]], [[Resolution|resolution]] 2.11&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[1ooj]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Caenorhabditis_elegans Caenorhabditis elegans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1OOJ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1OOJ FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.11&#8491;</td></tr>
--->
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr>
-{{STRUCTURE_1ooj|  PDB=1ooj  |  SCENE=  }}
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1ooj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ooj OCA], [https://pdbe.org/1ooj PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1ooj RCSB], [https://www.ebi.ac.uk/pdbsum/1ooj PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1ooj ProSAT], [https://www.topsan.org/Proteins/SECSG/1ooj TOPSAN]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/CALM_CAEEL CALM_CAEEL] Calmodulin mediates the control of a large number of enzymes, ion channels and other proteins by Ca(2+). Among the enzymes to be stimulated by the calmodulin-Ca(2+) complex are a number of protein kinases and phosphatases.
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/oo/1ooj_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1ooj ConSurf].
+<div style="clear:both"></div>
-'''Structural genomics of Caenorhabditis elegans : Calmodulin'''
+==See Also==
+*[[Calmodulin 3D structures|Calmodulin 3D structures]]
+__TOC__
-==About this Structure==
+</StructureSection>
-OOJ is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Caenorhabditis_elegans Caenorhabditis elegans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1OOJ OCA].
-==Reference==
-Structural genomics of caenorhabditis elegans: crystal structure of calmodulin., Symersky J, Lin G, Li S, Qiu S, Carson M, Schormann N, Luo M, Proteins. 2003 Dec 1;53(4):947-9. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/14635136 14635136]
 [[Category: Caenorhabditis elegans]]
-[[Category: Single protein]]
+[[Category: Large Structures]]
-[[Category: Carson, M.]]
+[[Category: Carson M]]
-[[Category: DeLucas, L.]]
+[[Category: DeLucas L]]
-[[Category: Li, S.]]
+[[Category: Li S]]
-[[Category: Lin, G.]]
+[[Category: Lin G]]
-[[Category: Luan, C H.]]
+[[Category: Luan C-H]]
-[[Category: Luo, D.]]
+[[Category: Luo D]]
-[[Category: Luo, M.]]
+[[Category: Luo M]]
-[[Category: Qiu, S.]]
+[[Category: Qiu S]]
-[[Category: SECSG, Southeast Collaboratory for Structural Genomics.]]
+[[Category: Symersky J]]
-[[Category: Symersky, J.]]
+[[Category: Tsao J]]
-[[Category: Tsao, J.]]
-[[Category: Calmodulin]]
-[[Category: Protein structure initiative]]
-[[Category: Psi]]
-[[Category: Secsg]]
-[[Category: Southeast collaboratory for structural genomic]]
-[[Category: Structural genomic]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sat May  3 04:06:18 2008''