1ooj: Difference between revisions

From Proteopedia
Jump to navigation Jump to search
← Older edit
No edit summary
No edit summary
 
(9 intermediate revisions by the same user not shown)
Line 1: Line 1:
[[Image:1ooj.png|left|200px]]


<!--
==Structural genomics of Caenorhabditis elegans : Calmodulin==
The line below this paragraph, containing "STRUCTURE_1ooj", creates the "Structure Box" on the page.
<StructureSection load='1ooj' size='340' side='right'caption='[[1ooj]], [[Resolution|resolution]] 2.11&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[1ooj]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Caenorhabditis_elegans Caenorhabditis elegans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1OOJ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1OOJ FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.11&#8491;</td></tr>
-->
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr>
{{STRUCTURE_1ooj|  PDB=1ooj  |  SCENE=  }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1ooj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ooj OCA], [https://pdbe.org/1ooj PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1ooj RCSB], [https://www.ebi.ac.uk/pdbsum/1ooj PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1ooj ProSAT], [https://www.topsan.org/Proteins/SECSG/1ooj TOPSAN]</span></td></tr>
 
</table>
===Structural genomics of Caenorhabditis elegans : Calmodulin===
== Function ==
 
[https://www.uniprot.org/uniprot/CALM_CAEEL CALM_CAEEL] Calmodulin mediates the control of a large number of enzymes, ion channels and other proteins by Ca(2+). Among the enzymes to be stimulated by the calmodulin-Ca(2+) complex are a number of protein kinases and phosphatases.
 
== Evolutionary Conservation ==
==About this Structure==
[[Image:Consurf_key_small.gif|200px|right]]
[[1ooj]] is a 1 chain structure of [[Calmodulin]] with sequence from [http://en.wikipedia.org/wiki/Caenorhabditis_elegans Caenorhabditis elegans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1OOJ OCA].  
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/oo/1ooj_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1ooj ConSurf].
<div style="clear:both"></div>


==See Also==
==See Also==
*[[Calmodulin]]
*[[Calmodulin 3D structures|Calmodulin 3D structures]]
 
__TOC__
==Reference==
</StructureSection>
<ref group="xtra">PMID:14635136</ref><references group="xtra"/>
[[Category: Caenorhabditis elegans]]
[[Category: Caenorhabditis elegans]]
[[Category: Carson, M.]]
[[Category: Large Structures]]
[[Category: DeLucas, L.]]
[[Category: Carson M]]
[[Category: Li, S.]]
[[Category: DeLucas L]]
[[Category: Lin, G.]]
[[Category: Li S]]
[[Category: Luan, C H.]]
[[Category: Lin G]]
[[Category: Luo, D.]]
[[Category: Luan C-H]]
[[Category: Luo, M.]]
[[Category: Luo D]]
[[Category: Qiu, S.]]
[[Category: Luo M]]
[[Category: SECSG, Southeast Collaboratory for Structural Genomics.]]
[[Category: Qiu S]]
[[Category: Symersky, J.]]
[[Category: Symersky J]]
[[Category: Tsao, J.]]
[[Category: Tsao J]]
[[Category: Calmodulin]]
[[Category: Metal binding protein]]
[[Category: Protein structure initiative]]
[[Category: Psi]]
[[Category: Secsg]]
[[Category: Southeast collaboratory for structural genomic]]
[[Category: Structural genomic]]

Latest revision as of 12:30, 16 August 2023

Structural genomics of Caenorhabditis elegans : CalmodulinStructural genomics of Caenorhabditis elegans : Calmodulin

Structural highlights

1ooj is a 1 chain structure with sequence from Caenorhabditis elegans. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 2.11Å
Ligands:
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT, TOPSAN

Function

CALM_CAEEL Calmodulin mediates the control of a large number of enzymes, ion channels and other proteins by Ca(2+). Among the enzymes to be stimulated by the calmodulin-Ca(2+) complex are a number of protein kinases and phosphatases.

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

See Also

1ooj, resolution 2.11Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA
Retrieved from "https://proteopedia.openfox.io/wiki/index.php?title=1ooj&oldid=3831409"