1ksy: Difference between revisions

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OCA

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 ==Crystal Structures of Two Intermediates in the Assembly of the Papillomavirus Replication Initiation Complex==
-<StructureSection load='1ksy' size='340' side='right' caption='[[1ksy]], [[Resolution|resolution]] 3.05&Aring;' scene=''>
+<StructureSection load='1ksy' size='340' side='right'caption='[[1ksy]], [[Resolution|resolution]] 3.05&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[1ksy]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Bovine_papillomavirus Bovine papillomavirus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1KSY OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1KSY FirstGlance]. <br>
+<table><tr><td colspan='2'>[[1ksy]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Bovine_papillomavirus Bovine papillomavirus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1KSY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1KSY FirstGlance]. <br>
-</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1ksx|1ksx]], [[1f08|1f08]]</td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.05&#8491;</td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1ksy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ksy OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1ksy RCSB], [http://www.ebi.ac.uk/pdbsum/1ksy PDBsum]</span></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1ksy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ksy OCA], [https://pdbe.org/1ksy PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1ksy RCSB], [https://www.ebi.ac.uk/pdbsum/1ksy PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1ksy ProSAT]</span></td></tr>
 </table>
 == Function ==
-[[http://www.uniprot.org/uniprot/VE1_BPV1 VE1_BPV1]] ATP-dependent DNA helicase required for initiation of viral DNA replication. It forms a complex with the viral E2 protein. The E1-E2 complex binds to the replication origin which contains binding sites for both proteins.
+[https://www.uniprot.org/uniprot/VE1_BPV1 VE1_BPV1] ATP-dependent DNA helicase required for initiation of viral DNA replication. It forms a complex with the viral E2 protein. The E1-E2 complex binds to the replication origin which contains binding sites for both proteins.
 == Evolutionary Conservation ==
 [[Image:Consurf_key_small.gif|200px|right]]
 Check<jmol>
    <jmolCheckbox>
-     <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ks/1ksy_consurf.spt"</scriptWhenChecked>
+     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ks/1ksy_consurf.spt"</scriptWhenChecked>
      <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
      <text>to colour the structure by Evolutionary Conservation</text>
    </jmolCheckbox>
-</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1ksy ConSurf].
 <div style="clear:both"></div>
 <div style="background-color:#fffaf0;">
@@ Line 26: / Line 27: @@
 From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 </div>
+<div class="pdbe-citations 1ksy" style="background-color:#fffaf0;"></div>
+==See Also==
+*[[Replication protein E1|Replication protein E1]]
 == References ==
 <references/>
@@ Line 31: / Line 36: @@
 </StructureSection>
 [[Category: Bovine papillomavirus]]
-[[Category: Enemark, E J]]
+[[Category: Large Structures]]
-[[Category: Joshua-Tor, L]]
+[[Category: Enemark EJ]]
-[[Category: Stenlund, A]]
+[[Category: Joshua-Tor L]]
-[[Category: Dna-binding domain]]
+[[Category: Stenlund A]]
-[[Category: Helicase]]
-[[Category: Initiator protein]]
-[[Category: Papillomavirus]]
-[[Category: Replication]]
-[[Category: Replication-dna complex]]