1ker: Difference between revisions

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 ==The crystal structure of dTDP-D-glucose 4,6-dehydratase (RmlB) from Streptococcus suis with dTDP-D-glucose bound==
-<StructureSection load='1ker' size='340' side='right' caption='[[1ker]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
+<StructureSection load='1ker' size='340' side='right'caption='[[1ker]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[1ker]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_43765 Atcc 43765]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1KER OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1KER FirstGlance]. <br>
+<table><tr><td colspan='2'>[[1ker]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptococcus_suis Streptococcus suis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1KER OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1KER FirstGlance]. <br>
-</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=DAU:2DEOXY-THYMIDINE-5-DIPHOSPHO-ALPHA-D-GLUCOSE'>DAU</scene>, <scene name='pdbligand=NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE'>NAD</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.2&#8491;</td></tr>
-<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1kep|1kep]], [[1ket|1ket]], [[1keu|1keu]], [[1kew|1kew]], [[1g1a|1g1a]]</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=DAU:2DEOXY-THYMIDINE-5-DIPHOSPHO-ALPHA-D-GLUCOSE'>DAU</scene>, <scene name='pdbligand=NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE'>NAD</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">rmlB ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1307 ATCC 43765])</td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1ker FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ker OCA], [https://pdbe.org/1ker PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1ker RCSB], [https://www.ebi.ac.uk/pdbsum/1ker PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1ker ProSAT]</span></td></tr>
-<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/dTDP-glucose_4,6-dehydratase dTDP-glucose 4,6-dehydratase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.2.1.46 4.2.1.46] </span></td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1ker FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ker OCA], [http://pdbe.org/1ker PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1ker RCSB], [http://www.ebi.ac.uk/pdbsum/1ker PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1ker ProSAT]</span></td></tr>
 </table>
 == Function ==
-[[http://www.uniprot.org/uniprot/RMLB_STRMU RMLB_STRMU]] Catalyzes the dehydration of dTDP-D-glucose to form dTDP-6-deoxy-D-xylo-4-hexulose via a three-step process involving oxidation, dehydration and reduction (By similarity).
+[https://www.uniprot.org/uniprot/Q8GIP9_STRSU Q8GIP9_STRSU]
 == Evolutionary Conservation ==
 [[Image:Consurf_key_small.gif|200px|right]]
@@ Line 31: / Line 29: @@
 </div>
 <div class="pdbe-citations 1ker" style="background-color:#fffaf0;"></div>
+==See Also==
+*[[DTDP-glucose 4%2C6-dehydratase|DTDP-glucose 4%2C6-dehydratase]]
 == References ==
 <references/>
 __TOC__
 </StructureSection>
-[[Category: Atcc 43765]]
+[[Category: Large Structures]]
-[[Category: DTDP-glucose 4,6-dehydratase]]
+[[Category: Streptococcus suis]]
-[[Category: Allard, S T.M]]
+[[Category: Allard STM]]
-[[Category: Allen, A G]]
+[[Category: Allen AG]]
-[[Category: Beis, K]]
+[[Category: Beis K]]
-[[Category: Giraud, M F]]
+[[Category: Giraud M-F]]
-[[Category: Graninger, M]]
+[[Category: Graninger M]]
-[[Category: Gross, J W]]
+[[Category: Gross JW]]
-[[Category: Hegeman, A D]]
+[[Category: Hegeman AD]]
-[[Category: Messner, P]]
+[[Category: Messner P]]
-[[Category: Naismith, J H]]
+[[Category: Naismith JH]]
-[[Category: Whitfield, C]]
+[[Category: Whitfield C]]
-[[Category: Lyase]]
-[[Category: Rossmann fold]]