3hip: Difference between revisions

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-{{Seed}}
-[[Image:3hip.png|left|200px]]
-<!--
+==HIGH-POTENTIAL IRON-SULFUR PROTEIN FROM CHROMATIUM PURPURATUM==
-The line below this paragraph, containing "STRUCTURE_3hip", creates the "Structure Box" on the page.
+<StructureSection load='3hip' size='340' side='right'caption='[[3hip]], [[Resolution|resolution]] 2.80&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[3hip]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Marichromatium_purpuratum Marichromatium purpuratum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3HIP OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3HIP FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.8&#8491;</td></tr>
--->
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SF4:IRON/SULFUR+CLUSTER'>SF4</scene></td></tr>
-{{STRUCTURE_3hip|  PDB=3hip  |  SCENE=  }}
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3hip FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3hip OCA], [https://pdbe.org/3hip PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3hip RCSB], [https://www.ebi.ac.uk/pdbsum/3hip PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3hip ProSAT]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/HIP_MARPU HIP_MARPU] Specific class of high-redox-potential 4Fe-4S ferredoxins. Functions in anaerobic electron transport in most purple and in some other photosynthetic bacteria and in at least one genus (Paracoccus) of halophilic, denitrifying bacteria.
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/hi/3hip_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3hip ConSurf].
+<div style="clear:both"></div>
+<div style="background-color:#fffaf0;">
+== Publication Abstract from PubMed ==
+The crystal structure of the high-potential iron-sulfur protein (HiPIP) isolated from Chromatium purpuratum is reported at 2.7 A resolution. The three HiPIP molecules in the asymmetric unit of the crystals form one and one-half dimers. Two molecules are related by a noncrystallographic symmetry rotation of approximately 175 degrees with negligible translation along the dyad axis. The third molecule in the asymmetric unit also forms a dimer with a second HiPIP molecule across the crystallographic 2-fold symmetry axis. The Fe4S4 clusters in both the crystallographic and noncrystallographic dimers are separated by approximately 13.0 A. Solution studies give mixed results regarding the oligomeric state of the C. purpuratum HiPIP. A comparison with crystal structures of HiPIPs from other species shows that HiPIP tends to associate rather nonspecifically about a conserved, relatively hydrophobic surface patch to form dimers.
-===HIGH-POTENTIAL IRON-SULFUR PROTEIN FROM CHROMATIUM PURPURATUM===
+Crystal structure and possible dimerization of the high-potential iron-sulfur protein from Chromatium purpuratum.,Kerfeld CA, Salmeen AE, Yeates TO Biochemistry. 1998 Oct 6;37(40):13911-7. PMID:9760225<ref>PMID:9760225</ref>
+From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-<!--
+</div>
-The line below this paragraph, {{ABSTRACT_PUBMED_9760225}}, adds the Publication Abstract to the page
+<div class="pdbe-citations 3hip" style="background-color:#fffaf0;"></div>
-(as it appears on PubMed at http://www.pubmed.gov), where 9760225 is the PubMed ID number.
+== References ==
--->
+<references/>
-{{ABSTRACT_PUBMED_9760225}}
+__TOC__
+</StructureSection>
-==About this Structure==
+[[Category: Large Structures]]
-HIP is a 3 chains structure of sequences from [http://en.wikipedia.org/wiki/Marichromatium_purpuratum Marichromatium purpuratum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3HIP OCA].
-==Reference==
-<ref group="xtra">PMID:9760225</ref><references group="xtra"/>
 [[Category: Marichromatium purpuratum]]
-[[Category: Kerfeld, C A.]]
+[[Category: Kerfeld CA]]
-[[Category: Salmeen, A E.]]
+[[Category: Salmeen AE]]
-[[Category: Yeates, T O.]]
+[[Category: Yeates TO]]
-[[Category: Electron transfer]]
-[[Category: Metalloprotein]]
-[[Category: Photosynthesis]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 06:16:50 2009''