1i77: Difference between revisions

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-{{Seed}}
-[[Image:1i77.png|left|200px]]
-<!--
+==CYTOCHROME C3 FROM DESULFOVIBRIO DESULFURICANS ESSEX 6==
-The line below this paragraph, containing "STRUCTURE_1i77", creates the "Structure Box" on the page.
+<StructureSection load='1i77' size='340' side='right'caption='[[1i77]], [[Resolution|resolution]] 1.95&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[1i77]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Desulfovibrio_desulfuricans Desulfovibrio desulfuricans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1I77 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1I77 FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.95&#8491;</td></tr>
--->
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene></td></tr>
-{{STRUCTURE_1i77|  PDB=1i77  |  SCENE=  }}
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1i77 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1i77 OCA], [https://pdbe.org/1i77 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1i77 RCSB], [https://www.ebi.ac.uk/pdbsum/1i77 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1i77 ProSAT]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/Q9L915_DESDE Q9L915_DESDE]
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/i7/1i77_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1i77 ConSurf].
+<div style="clear:both"></div>
+<div style="background-color:#fffaf0;">
+== Publication Abstract from PubMed ==
+Cytochrome c3, a small (14-kDa) soluble tetraheme protein was isolated from the periplasmic fraction of Desulfovibrio desulfuricans strain Essex 6. Its major physiological function appears to be that of an electron carrier for the periplasmic hydrogenase. It has been also shown to interact with the high-molecular-mass cytochrome complex in the cytoplasmic membrane, which eventually feeds electrons into the membraneous quinone pool, as well as with the membrane-associated dissimilatory sulfite reductase. The EPR spectra show features of four different low-spin Fe(III) hemes. Orthorhombic crystals of cytochrome c3 were obtained and X-ray diffraction data were collected to below 2 A resolution. The structure was solved by molecular replacement using cytochrome c3 from D. desulfuricans ATCC 27774 as a search model.
-===CYTOCHROME C3 FROM DESULFOVIBRIO DESULFURICANS ESSEX 6===
+Spectroscopic investigation and determination of reactivity and structure of the tetraheme cytochrome c3 from Desulfovibrio desulfuricans Essex 6.,Einsle O, Foerster S, Mann K, Fritz G, Messerschmidt A, Kroneck PM Eur J Biochem. 2001 May;268(10):3028-35. PMID:11358521<ref>PMID:11358521</ref>
+From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
+</div>
+<div class="pdbe-citations 1i77" style="background-color:#fffaf0;"></div>
-<!--
+==See Also==
-The line below this paragraph, {{ABSTRACT_PUBMED_11358521}}, adds the Publication Abstract to the page
+*[[Cytochrome C 3D structures|Cytochrome C 3D structures]]
-(as it appears on PubMed at http://www.pubmed.gov), where 11358521 is the PubMed ID number.
+== References ==
--->
+<references/>
-{{ABSTRACT_PUBMED_11358521}}
+__TOC__
+</StructureSection>
-==About this Structure==
-I77 is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Desulfovibrio_desulfuricans Desulfovibrio desulfuricans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1I77 OCA].
-==Reference==
-<ref group="xtra">PMID:11358521</ref><references group="xtra"/>
 [[Category: Desulfovibrio desulfuricans]]
-[[Category: Einsle, O.]]
+[[Category: Large Structures]]
-[[Category: Foerster, S.]]
+[[Category: Einsle O]]
-[[Category: Fritz, G.]]
+[[Category: Foerster S]]
-[[Category: Kroneck, P M.H.]]
+[[Category: Fritz G]]
-[[Category: Mann, K H.]]
+[[Category: Kroneck PMH]]
-[[Category: Messerschmidt, A.]]
+[[Category: Mann KH]]
-[[Category: Multi-heme cytochrome c]]
+[[Category: Messerschmidt A]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 21:55:35 2009''