1i2b: Difference between revisions

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-[[Image:1i2b.gif|left|200px]]
- {{Structure
+==CRYSTAL STRUCTURE OF MUTANT T145A SQD1 PROTEIN COMPLEX WITH NAD AND UDP-SULFOQUINOVOSE/UDP-GLUCOSE==
-|PDB= 1i2b |SIZE=350|CAPTION= <scene name='initialview01'>1i2b</scene>, resolution 1.75&Aring;
+<StructureSection load='1i2b' size='340' side='right'caption='[[1i2b]], [[Resolution|resolution]] 1.75&Aring;' scene=''>
-|SITE=
+== Structural highlights ==
-|LIGAND= <scene name='pdbligand=NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE'>NAD</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=UPG:URIDINE-5&#39;-DIPHOSPHATE-GLUCOSE'>UPG</scene>, <scene name='pdbligand=USQ:SULFOQUINOVOSE-URIDINE-C1,5&#39;-DIPHOSPHATE'>USQ</scene>
+<table><tr><td colspan='2'>[[1i2b]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1I2B OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1I2B FirstGlance]. <br>
-|ACTIVITY=
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.75&#8491;</td></tr>
-|GENE= SQD1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=3702 Arabidopsis thaliana])
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE'>NAD</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=UPG:URIDINE-5-DIPHOSPHATE-GLUCOSE'>UPG</scene>, <scene name='pdbligand=USQ:SULFOQUINOVOSE-URIDINE-C1,5-DIPHOSPHATE'>USQ</scene></td></tr>
-|DOMAIN=
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1i2b FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1i2b OCA], [https://pdbe.org/1i2b PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1i2b RCSB], [https://www.ebi.ac.uk/pdbsum/1i2b PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1i2b ProSAT]</span></td></tr>
-|RELATEDENTRY=[[1qrr|1QRR]]
+</table>
-|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1i2b FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1i2b OCA], [http://www.ebi.ac.uk/pdbsum/1i2b PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1i2b RCSB]</span>
+== Function ==
-}}
+[https://www.uniprot.org/uniprot/SQD1_ARATH SQD1_ARATH] Involved in the biosynthesis of sulfolipids found in thylakoid membranes. Converts UDP-glucose and sulfite to the sulfolipid head group precursor UDP-sulfoquinovose.<ref>PMID:11073956</ref>
+== Evolutionary Conservation ==
-'''CRYSTAL STRUCTURE OF MUTANT T145A SQD1 PROTEIN COMPLEX WITH NAD AND UDP-SULFOQUINOVOSE/UDP-GLUCOSE'''
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
-==About this Structure==
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/i2/1i2b_consurf.spt"</scriptWhenChecked>
-I2B is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1I2B OCA].
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1i2b ConSurf].
+<div style="clear:both"></div>
+== References ==
+<references/>
+__TOC__
+</StructureSection>
 [[Category: Arabidopsis thaliana]]
-[[Category: Single protein]]
+[[Category: Large Structures]]
-[[Category: Benning, C.]]
+[[Category: Benning C]]
-[[Category: Garavito, R M.]]
+[[Category: Garavito RM]]
-[[Category: Ginell, S L.]]
+[[Category: Ginell SL]]
-[[Category: Sanda, S L.]]
+[[Category: Sanda SL]]
-[[Category: Theisen, M J.]]
+[[Category: Theisen MJ]]
-[[Category: rossmann fold]]
-[[Category: sdr]]
-[[Category: short-chain dehydrogenase/reductase]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Mar 30 21:13:35 2008''