5gjh: Difference between revisions
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==Gads SH2 domain/CD28-derived peptide complex== | ==Gads SH2 domain/CD28-derived peptide complex== | ||
<StructureSection load='5gjh' size='340' side='right' caption='[[5gjh]], [[Resolution|resolution]] 1.20Å' scene=''> | <StructureSection load='5gjh' size='340' side='right'caption='[[5gjh]], [[Resolution|resolution]] 1.20Å' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
<table><tr><td colspan='2'>[[5gjh]] is a 4 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5GJH OCA]. For a <b>guided tour on the structure components</b> use [ | <table><tr><td colspan='2'>[[5gjh]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5GJH OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5GJH FirstGlance]. <br> | ||
</td></tr><tr id=' | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.2Å</td></tr> | ||
<tr id=' | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PTR:O-PHOSPHOTYROSINE'>PTR</scene></td></tr> | ||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5gjh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5gjh OCA], [https://pdbe.org/5gjh PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5gjh RCSB], [https://www.ebi.ac.uk/pdbsum/5gjh PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5gjh ProSAT]</span></td></tr> | ||
</table> | </table> | ||
== Function == | == Function == | ||
[ | [https://www.uniprot.org/uniprot/GRAP2_HUMAN GRAP2_HUMAN] Interacts with SLP-76 to regulate NF-AT activation. Binds to tyrosine-phosphorylated shc. | ||
<div style="background-color:#fffaf0;"> | <div style="background-color:#fffaf0;"> | ||
== Publication Abstract from PubMed == | == Publication Abstract from PubMed == | ||
| Line 23: | Line 23: | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
[[Category: Abe | [[Category: Homo sapiens]] | ||
[[Category: Ikura | [[Category: Large Structures]] | ||
[[Category: Inaba | [[Category: Abe R]] | ||
[[Category: Ito | [[Category: Ikura T]] | ||
[[Category: Morii | [[Category: Inaba S]] | ||
[[Category: Numoto | [[Category: Ito N]] | ||
[[Category: Oda | [[Category: Morii H]] | ||
[[Category: Ogawa | [[Category: Numoto N]] | ||
[[Category: Oda M]] | |||
[[Category: Ogawa S]] | |||
Latest revision as of 14:33, 2 August 2023
Gads SH2 domain/CD28-derived peptide complexGads SH2 domain/CD28-derived peptide complex
Structural highlights
FunctionGRAP2_HUMAN Interacts with SLP-76 to regulate NF-AT activation. Binds to tyrosine-phosphorylated shc. Publication Abstract from PubMedFull activation of T cells and differentiation into effector T cells are essential for many immune responses and require co-stimulatory signaling via the CD28 receptor. Extracellular ligand binding to CD28 recruits protein-tyrosine kinases to its cytoplasmic tail, which contains a YMNM motif. Following phosphorylation of the tyrosine, the proteins growth factor receptor-bound protein 2 (Grb2), Grb2-related adaptor downstream of Shc (Gads), and p85 subunit of phosphoinositide 3-kinase may bind to pYMNM (where pY is phosphotyrosine) via their Src homology 2 (SH2) domains, leading to downstream signaling to distinct immune pathways. These three adaptor proteins bind to the same site on CD28 with variable affinity, and all are important for CD28-mediated co-stimulatory function. However, the mechanism of how these proteins recognize and compete for CD28 is unclear. To visualize their interactions with CD28, we have determined the crystal structures of Gads SH2 and two p85 SH2 domains in complex with a CD28-derived phosphopeptide. The high resolution structures obtained revealed that, whereas the CD28 phosphopeptide bound to Gads SH2 is in a bent conformation similar to that when bound to Grb2 SH2, it adopts a more extended conformation when bound to the N- and C-terminal SH2 domains of p85. These differences observed in the peptide-protein interactions correlated well with the affinity and other thermodynamic parameters for each interaction determined by isothermal titration calorimetry. The detailed insight into these interactions reported here may inform the development of compounds that specifically inhibit the association of CD28 with these adaptor proteins to suppress excessive T cell responses, such as in allergies and autoimmune diseases. Crystal Structures and Thermodynamic Analysis Reveal Distinct Mechanisms of CD28 Phosphopeptide Binding to the Src Homology 2 (SH2) Domains of Three Adaptor Proteins.,Inaba S, Numoto N, Ogawa S, Morii H, Ikura T, Abe R, Ito N, Oda M J Biol Chem. 2017 Jan 20;292(3):1052-1060. doi: 10.1074/jbc.M116.755173. Epub, 2016 Dec 6. PMID:27927989[1] From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine. References
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