5g0q: Difference between revisions
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==beta-glucuronidase with an activity-based probe (N-alkyl cyclophellitol aziridine) bound== | ==beta-glucuronidase with an activity-based probe (N-alkyl cyclophellitol aziridine) bound== | ||
<StructureSection load='5g0q' size='340' side='right' caption='[[5g0q]], [[Resolution|resolution]] 1.65Å' scene=''> | <StructureSection load='5g0q' size='340' side='right'caption='[[5g0q]], [[Resolution|resolution]] 1.65Å' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
<table><tr><td colspan='2'>[[5g0q]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5G0Q OCA]. For a <b>guided tour on the structure components</b> use [ | <table><tr><td colspan='2'>[[5g0q]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Acidobacterium_capsulatum Acidobacterium capsulatum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5G0Q OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5G0Q FirstGlance]. <br> | ||
</td></tr><tr id=' | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.65Å</td></tr> | ||
<tr id=' | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=IF6:(1R,2S,3R,4S,5S,6R)-7-(8-AZIDOOCTYL)-3,4,5-TRIHYDROXY-'>IF6</scene></td></tr> | ||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5g0q FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5g0q OCA], [https://pdbe.org/5g0q PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5g0q RCSB], [https://www.ebi.ac.uk/pdbsum/5g0q PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5g0q ProSAT]</span></td></tr> | |||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | |||
</table> | </table> | ||
== Function == | |||
[https://www.uniprot.org/uniprot/C1F2K5_ACIC5 C1F2K5_ACIC5] | |||
<div style="background-color:#fffaf0;"> | <div style="background-color:#fffaf0;"> | ||
== Publication Abstract from PubMed == | == Publication Abstract from PubMed == | ||
| Line 18: | Line 19: | ||
</div> | </div> | ||
<div class="pdbe-citations 5g0q" style="background-color:#fffaf0;"></div> | <div class="pdbe-citations 5g0q" style="background-color:#fffaf0;"></div> | ||
==See Also== | |||
*[[Glucuronisidase 3D structures|Glucuronisidase 3D structures]] | |||
== References == | == References == | ||
<references/> | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
[[Category: | [[Category: Acidobacterium capsulatum]] | ||
[[Category: Davies | [[Category: Large Structures]] | ||
[[Category: Jiang | [[Category: Davies GJ]] | ||
[[Category: Jin | [[Category: Jiang JB]] | ||
[[Category: Overkleeft | [[Category: Jin Y]] | ||
[[Category: Wu | [[Category: Overkleeft HS]] | ||
[[Category: Wu L]] | |||
Latest revision as of 16:34, 26 July 2023
beta-glucuronidase with an activity-based probe (N-alkyl cyclophellitol aziridine) boundbeta-glucuronidase with an activity-based probe (N-alkyl cyclophellitol aziridine) bound
Structural highlights
FunctionPublication Abstract from PubMedHumans express at least two distinct beta-glucuronidase enzymes that are involved in disease: exo-acting beta-glucuronidase (GUSB), whose deficiency gives rise to mucopolysaccharidosis type VII, and endo-acting heparanase (HPSE), whose overexpression is implicated in inflammation and cancers. The medical importance of these enzymes necessitates reliable methods to assay their activities in tissues. Herein, we present a set of beta-glucuronidase-specific activity-based probes (ABPs) that allow rapid and quantitative visualization of GUSB and HPSE in biological samples, providing a powerful tool for dissecting their activities in normal and disease states. Unexpectedly, we find that the supposedly inactive HPSE proenzyme proHPSE is also labeled by our ABPs, leading to surprising insights regarding structural relationships between proHPSE, mature HPSE, and their bacterial homologs. Our results demonstrate the application of beta-glucuronidase ABPs in tracking pathologically relevant enzymes and provide a case study of how ABP-driven approaches can lead to discovery of unanticipated structural and biochemical functionality. Activity-based probes for functional interrogation of retaining beta-glucuronidases.,Wu L, Jiang J, Jin Y, Kallemeijn WW, Kuo CL, Artola M, Dai W, van Elk C, van Eijk M, van der Marel GA, Codee JDC, Florea BI, Aerts JMFG, Overkleeft HS, Davies GJ Nat Chem Biol. 2017 Jun 5. doi: 10.1038/nchembio.2395. PMID:28581485[1] From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine. See AlsoReferences
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