1alz: Difference between revisions

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-[[Image:1alz.png|left|200px]]
-<!--
+==GRAMICIDIN D FROM BACILLUS BREVIS (ETHANOL SOLVATE)==
-The line below this paragraph, containing "STRUCTURE_1alz", creates the "Structure Box" on the page.
+<StructureSection load='1alz' size='340' side='right'caption='[[1alz]], [[Resolution|resolution]] 0.86&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[1alz]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Brevibacillus_brevis Brevibacillus brevis]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1gma 1gma]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ALZ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1ALZ FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 0.86&#8491;</td></tr>
--->
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=DLE:D-LEUCINE'>DLE</scene>, <scene name='pdbligand=DVA:D-VALINE'>DVA</scene>, <scene name='pdbligand=EOH:ETHANOL'>EOH</scene>, <scene name='pdbligand=ETA:ETHANOLAMINE'>ETA</scene>, <scene name='pdbligand=FVA:N-FORMYL-L-VALINE'>FVA</scene>, <scene name='pdbligand=PRD_000153:GRAMICIDIN+C'>PRD_000153</scene>, <scene name='pdbligand=QIL:N-FORMYL-L-ISOLEUCINE'>QIL</scene></td></tr>
-{{STRUCTURE_1alz|  PDB=1alz  |  SCENE=  }}
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1alz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1alz OCA], [https://pdbe.org/1alz PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1alz RCSB], [https://www.ebi.ac.uk/pdbsum/1alz PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1alz ProSAT]</span></td></tr>
+</table>
+<div style="background-color:#fffaf0;">
+== Publication Abstract from PubMed ==
+The linear pentadecapeptide antibiotic gramicidin D is a heterogeneous mixture of six components. Precise refinements of three-dimensional structures of naturally occurring gramicidin D in crystals obtained from methanol, ethanol, and n-propanol demonstrate the unexpected presence of stable left-handed antiparallel double-helical heterodimers that vary with the crystallization solvent. The side chains of Trp residues in the three structures exhibit sequence-specific patterns of conformational preference. Tyr substitution for Trp at position 11 appears to favor beta ribbon formation and stabilization of the antiparallel double helix that acts as a template for gramicidin folding and nucleation of different crystal forms. The fact that a minor component in a heterogeneous mixture influences aggregation and crystal nucleation has potential applications to other systems in which anomalous behavior is exhibited by aggregation of apparently homogeneous materials, such as the enigmatic behavior of prion proteins.
-===GRAMICIDIN D FROM BACILLUS BREVIS (ETHANOL SOLVATE)===
+Heterodimer formation and crystal nucleation of gramicidin D.,Burkhart BM, Gassman RM, Langs DA, Pangborn WA, Duax WL Biophys J. 1998 Nov;75(5):2135-46. PMID:9788907<ref>PMID:9788907</ref>
+From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-<!--
+</div>
-The line below this paragraph, {{ABSTRACT_PUBMED_9788907}}, adds the Publication Abstract to the page
+<div class="pdbe-citations 1alz" style="background-color:#fffaf0;"></div>
-(as it appears on PubMed at http://www.pubmed.gov), where 9788907 is the PubMed ID number.
--->
-{{ABSTRACT_PUBMED_9788907}}
-==About this Structure==
-[[1alz]] is a 2 chain structure of [[Gramicidin]] with sequence from [http://en.wikipedia.org/wiki/Brevibacillus_brevis Brevibacillus brevis]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1gma 1gma]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ALZ OCA].
 ==See Also==
-*[[Gramicidin]]
+*[[Gramicidin|Gramicidin]]
+== References ==
-==Reference==
+<references/>
-<ref group="xtra">PMID:009788907</ref><ref group="xtra">PMID:002455345</ref><references group="xtra"/>
+__TOC__
+</StructureSection>
 [[Category: Brevibacillus brevis]]
-[[Category: Burkhart, B M.]]
+[[Category: Large Structures]]
-[[Category: Duax, W L.]]
+[[Category: Burkhart BM]]
-[[Category: Langs, D A.]]
+[[Category: Duax WL]]
-[[Category: Pangborn, W A.]]
+[[Category: Langs DA]]
-[[Category: Antibacterial]]
+[[Category: Pangborn WA]]
-[[Category: Antibiotic]]
-[[Category: Antifungal]]
-[[Category: Gramicidin]]
-[[Category: Linear gramicidin]]
-[[Category: Membrane ion channel]]