5es7: Difference between revisions

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 ==Crystal structure of the F-A domains of the LgrA initiation module soaked with FON, AMPcPP, and valine.==
-<StructureSection load='5es7' size='340' side='right' caption='[[5es7]], [[Resolution|resolution]] 2.81&Aring;' scene=''>
+<StructureSection load='5es7' size='340' side='right'caption='[[5es7]], [[Resolution|resolution]] 2.81&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[5es7]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5ES7 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5ES7 FirstGlance]. <br>
+<table><tr><td colspan='2'>[[5es7]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Brevibacillus_parabrevis Brevibacillus parabrevis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5ES7 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5ES7 FirstGlance]. <br>
-</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=APC:DIPHOSPHOMETHYLPHOSPHONIC+ACID+ADENOSYL+ESTER'>APC</scene>, <scene name='pdbligand=FON:N-{[4-({[(6R)-2-AMINO-5-FORMYL-4-OXO-1,4,5,6,7,8-HEXAHYDROPTERIDIN-6-YL]METHYL}AMINO)PHENYL]CARBONYL}-L-GLUTAMIC+ACID'>FON</scene>, <scene name='pdbligand=VAL:VALINE'>VAL</scene></td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.805&#8491;</td></tr>
-<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[5es5|5es5]], [[5es6|5es6]], [[5es8|5es8]], [[5es9|5es9]]</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=APC:DIPHOSPHOMETHYLPHOSPHONIC+ACID+ADENOSYL+ESTER'>APC</scene>, <scene name='pdbligand=FON:N-{[4-({[(6R)-2-AMINO-5-FORMYL-4-OXO-1,4,5,6,7,8-HEXAHYDROPTERIDIN-6-YL]METHYL}AMINO)PHENYL]CARBONYL}-L-GLUTAMIC+ACID'>FON</scene>, <scene name='pdbligand=VAL:VALINE'>VAL</scene></td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5es7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5es7 OCA], [http://pdbe.org/5es7 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5es7 RCSB], [http://www.ebi.ac.uk/pdbsum/5es7 PDBsum]</span></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5es7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5es7 OCA], [https://pdbe.org/5es7 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5es7 RCSB], [https://www.ebi.ac.uk/pdbsum/5es7 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5es7 ProSAT]</span></td></tr>
 </table>
 == Function ==
-[[http://www.uniprot.org/uniprot/LGRA_BREPA LGRA_BREPA]] Activates valine (or leucine, but much less frequently), and then glycine and catalyzes the formation of the peptide bond in the first step of peptide synthesis. This enzyme may also play a role in N-formylation of the first amino acid residue in the synthesized dipeptide.
+[https://www.uniprot.org/uniprot/LGRA_BREPA LGRA_BREPA] Activates valine (or leucine, but much less frequently), and then glycine and catalyzes the formation of the peptide bond in the first step of peptide synthesis. This enzyme may also play a role in N-formylation of the first amino acid residue in the synthesized dipeptide.
 <div style="background-color:#fffaf0;">
 == Publication Abstract from PubMed ==
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 </div>
 <div class="pdbe-citations 5es7" style="background-color:#fffaf0;"></div>
+==See Also==
+*[[Linear gramicidin synthase|Linear gramicidin synthase]]
 == References ==
 <references/>
 __TOC__
 </StructureSection>
-[[Category: Aloise, M N]]
+[[Category: Brevibacillus parabrevis]]
-[[Category: Reimer, J M]]
+[[Category: Large Structures]]
-[[Category: Schmeing, T M]]
+[[Category: Aloise MN]]
-[[Category: Adenylation domain]]
+[[Category: Reimer JM]]
-[[Category: Formylation domain]]
+[[Category: Schmeing TM]]
-[[Category: Initiation module]]
-[[Category: Ligase]]
-[[Category: Nrp]]