5dht: Difference between revisions

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 ==Crystal structure of NAD kinase 1 from Listeria monocytogenes in complex with a novel inhibitor==
-<StructureSection load='5dht' size='340' side='right' caption='[[5dht]], [[Resolution|resolution]] 2.59&Aring;' scene=''>
+<StructureSection load='5dht' size='340' side='right'caption='[[5dht]], [[Resolution|resolution]] 2.59&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[5dht]] is a 4 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5DHT OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5DHT FirstGlance]. <br>
+<table><tr><td colspan='2'>[[5dht]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Listeria_monocytogenes_EGD-e Listeria monocytogenes EGD-e]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5DHT OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5DHT FirstGlance]. <br>
-</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=5A9:5-AZIDO-8-[(2-{[2-(3-BROMOPHENYL)ETHYL]AMINO}-2-OXOETHYL)SULFANYL]-5-DEOXYADENOSINE'>5A9</scene>, <scene name='pdbligand=CIT:CITRIC+ACID'>CIT</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.59&#8491;</td></tr>
-<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[5dhu|5dhu]], [[5dhs|5dhs]], [[5dhr|5dhr]], [[5dhq|5dhq]], [[5dhp|5dhp]]</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=5A9:5-AZIDO-8-[(2-{[2-(3-BROMOPHENYL)ETHYL]AMINO}-2-OXOETHYL)SULFANYL]-5-DEOXYADENOSINE'>5A9</scene>, <scene name='pdbligand=CIT:CITRIC+ACID'>CIT</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
-<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/NAD(+)_kinase NAD(+) kinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.1.23 2.7.1.23] </span></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5dht FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5dht OCA], [https://pdbe.org/5dht PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5dht RCSB], [https://www.ebi.ac.uk/pdbsum/5dht PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5dht ProSAT]</span></td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5dht FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5dht OCA], [http://pdbe.org/5dht PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5dht RCSB], [http://www.ebi.ac.uk/pdbsum/5dht PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5dht ProSAT]</span></td></tr>
 </table>
 == Function ==
-[[http://www.uniprot.org/uniprot/NADK1_LISMO NADK1_LISMO]] Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP.[HAMAP-Rule:MF_00361]<ref>PMID:17686780</ref> <ref>PMID:22608967</ref>
+[https://www.uniprot.org/uniprot/NADK1_LISMO NADK1_LISMO] Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP.[HAMAP-Rule:MF_00361]<ref>PMID:17686780</ref> <ref>PMID:22608967</ref>
 <div style="background-color:#fffaf0;">
 == Publication Abstract from PubMed ==
@@ Line 27: / Line 26: @@
 __TOC__
 </StructureSection>
-[[Category: Assairi, L]]
+[[Category: Large Structures]]
-[[Category: Gelin, M]]
+[[Category: Listeria monocytogenes EGD-e]]
-[[Category: Huteau, V]]
+[[Category: Assairi L]]
-[[Category: Labesse, G]]
+[[Category: Gelin M]]
-[[Category: Paoletti, J]]
+[[Category: Huteau V]]
-[[Category: Pochet, S]]
+[[Category: Labesse G]]
-[[Category: Tetrameric nad kinase]]
+[[Category: Paoletti J]]
-[[Category: Transferase]]
+[[Category: Pochet S]]